Miyakogusa Predicted Gene

Lj3g3v1931890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1931890.1 Non Chatacterized Hit- tr|B9T0J3|B9T0J3_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,41.06,2e-18,seg,NULL,CUFF.43452.1
         (407 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26455.1 | Symbols: WIP1 | WPP domain interacting protein 1 |...    69   4e-12
AT3G13360.1 | Symbols: WIP3 | WPP domain interacting protein 3 |...    54   1e-07

>AT4G26455.1 | Symbols: WIP1 | WPP domain interacting protein 1 |
           chr4:13365737-13367384 FORWARD LENGTH=489
          Length = 489

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 17/198 (8%)

Query: 1   MDL-----GTESVEENELNHDGDENGTRDGDSI-----GDENLGLGFDGNSGVSTDQKEE 50
           MDL       ESV++N L      N   DG S+      DE++ L    NS    +  + 
Sbjct: 1   MDLESESSALESVDDNVLIQQSASNVCDDGRSLDNGSCSDESVKLLSTSNS---VELGKP 57

Query: 51  VVDEGSGDASSSKGTPTKGFGLKKWKRIRRDVVKDPNSSAESGKVLLKRGLSGSGNVNLS 110
           +  +  GD   +     KG GL+KW+RIRRD+VKD +++ E+ K  LKRGLSG  + +  
Sbjct: 58  MSFDSPGDGGGAYSPVLKGQGLRKWRRIRRDLVKDTSANMENSKA-LKRGLSGVAHSHGK 116

Query: 111 ENQPFSRDVKEKNDGSSNTFGNVVFP-EGFAGRGSS-SDSRYAVGSGFVVGTXXXXXXXX 168
           + Q  S +V++++ GS  +   +    +GF   GSS  DSR+  G GF  G         
Sbjct: 117 QMQFQSPEVEQESQGSVGSVNMLKSSGDGFDILGSSGYDSRFVAGVGFSAGMDLEIDDDR 176

Query: 169 XXXXXTAASEPK-IRHDK 185
                T A  PK IR++K
Sbjct: 177 SSKSSTVARAPKVIRYEK 194


>AT3G13360.1 | Symbols: WIP3 | WPP domain interacting protein 3 |
           chr3:4338472-4339982 REVERSE LENGTH=459
          Length = 459

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 42  GVSTDQKEEVVDEGSGDASSSKGTPTKGFGLKKWKRIRRD-VVKDPNSSAESGKVLLKRG 100
           GV + Q+   V+   G   S++    KGFGLKKW+RI+RD  V+D  +  + G  LLKRG
Sbjct: 33  GVGSPQRSNSVESPGGSVHSTR----KGFGLKKWRRIKRDGPVRDEAAPVDDGSKLLKRG 88

Query: 101 LSGSGNVNLSENQPFSRDVKEKNDGSSNTFGNVVFPEGFAGRGSSSDSRYAVGSGF 156
           L+G  N      +  S + ++ ++GS  +   V  P    G        +AVG  F
Sbjct: 89  LAGLVNPPSKHVEFSSVEARQSSEGSVGSVNMVHHPGVANGFSPDIGCMFAVGQAF 144