Miyakogusa Predicted Gene

Lj3g3v1906600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1906600.1 Non Chatacterized Hit- tr|I0Z603|I0Z603_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.57,3e-18,NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT,NULL;
Complex1_LYR_2,NULL,CUFF.43285.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12260.1 | Symbols:  | LYR family of Fe/S cluster biogenesis ...   176   5e-45

>AT3G12260.1 | Symbols:  | LYR family of Fe/S cluster biogenesis
           protein | chr3:3909252-3910337 REVERSE LENGTH=133
          Length = 133

 Score =  176 bits (445), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 100/129 (77%), Gaps = 2/129 (1%)

Query: 5   LRSVRVPPNSVSLEEARHRVFDFFRIACRSLPSVMETYNLYDVASVSQLRSTVASEIRKN 64
           LR + VPPNS +L EAR RVFDFFR ACRS+P++M+ YNL DV + SQLR  ++++IR N
Sbjct: 7   LRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIRNN 66

Query: 65  THVTDPKVIDMLLFKATEELKDIVDHAKQRHHVVGQYVVGRHKLEQQELGSKGQTISPFL 124
            H+TDPKVID+L+FK  EEL DIVDHAKQRHH++GQYVVG   +  Q  G+K Q  + FL
Sbjct: 67  AHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVGEGLV--QNTGNKDQGKTDFL 124

Query: 125 QNFYKTNYF 133
           +NFY +NYF
Sbjct: 125 KNFYTSNYF 133