Miyakogusa Predicted Gene
- Lj3g3v1906470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1906470.1 tr|I1M0N3|I1M0N3_SOYBN DNA-directed RNA
polymerase OS=Glycine max GN=Gma.25522 PE=3
SV=1,86.2,0,RNA_pol_Rpb2_6,DNA-directed RNA polymerase, subunit 2,
domain 6; RNA_pol_Rpb2_3,RNA polymerase Rpb2,,CUFF.43307.1
(994 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29940.1 | Symbols: NRPA2 | nuclear RNA polymerase A2 | chr1:... 1459 0.0
AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:... 359 4e-99
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA p... 296 6e-80
AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B | chr... 270 4e-72
AT3G23780.2 | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr... 268 2e-71
AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclea... 268 2e-71
ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta | chrC... 102 1e-21
>AT1G29940.1 | Symbols: NRPA2 | nuclear RNA polymerase A2 |
chr1:10479322-10486670 REVERSE LENGTH=1178
Length = 1178
Score = 1459 bits (3778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/997 (69%), Positives = 830/997 (83%), Gaps = 11/997 (1%)
Query: 2 STVRNSFSQRREGYTDKAVVIRCVRADQSSLTVKLYYLRNDSARLGFWVKGREYLLPVGI 61
S +RNSF R+EGY+ KAVV RCVR DQSS+TVKLYYLRN SAR+GFW+ GREYLLPVG+
Sbjct: 179 SMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGL 238
Query: 62 VLKALIDTSDLEIRTNLKSCYNEKYEKGKGAVGTQRVDDRARMIIEEVRQLSLFTRLQCL 121
VLKAL ++ D EI +L CY+E Y +G GA+GTQ V +RA++I++EVR L LFTR QC
Sbjct: 239 VLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCR 298
Query: 122 NYIGEHFQPILTELKNDSYDTVAKAVLKDYVFVHLDDNFDKFNLLIFMLQKLFSLVDGTS 181
++G+HFQP+L +K +S VA+AVL+DY+FVHLD++ DKFNLLIF++QKL+SLVD TS
Sbjct: 299 KHLGQHFQPVLDGVKKESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTS 358
Query: 182 VLDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQSGK----DEMKRKSGTFDFSEIFVVKK 237
+ DNPDSLQNQE+L+PGH+IT+YLKEKLE+WL+ K DE+ + F F + VKK
Sbjct: 359 LPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKK 418
Query: 238 CFDKTPARAISTSIENMLKTGRLVTNTGLDLQQRAGYTVQADRLNYLRFLSHFRAVHRGA 297
+K P R+I TSIE +LKTG L T +GLDLQQRAGYTVQA+RLN+LRFLS FRAVHRGA
Sbjct: 419 LINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGA 478
Query: 298 SFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSYFDSQGSIKDYFKI 357
SFAGLRTTTVRKLLPESWGFLCPVHTPDG PCGLLNHMT T RITS FDS+G+I+D+ KI
Sbjct: 479 SFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKI 538
Query: 358 KISILDILVDSGMTQLVPKLLLPGPPEVLTVLLDGCIVGCIPSGEVEKIVAHIRELKVSS 417
+ S++D+L +GM +PKL+ GPP+V+ VLLDG +VG + S V K+V++IR LKV +
Sbjct: 539 RKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEA 598
Query: 418 SAMIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFVRPVRNISILSNENKNIDLIGPFEQVF 477
++IP+DLEVGYVP SMGG+YPGLYL + P+RF+RPV+NISI S+ NI+LIGPFEQVF
Sbjct: 599 PSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQVF 655
Query: 478 MEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQMAKQTMA 537
MEI CPDGG+GGR +S ATHEEIHPTGM+SVVAN TPWSDHNQSPRNMYQCQMAKQTMA
Sbjct: 656 MEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMA 715
Query: 538 FSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAM 597
+S+Q +Q RADQK+YHLQTPQ+P+VRT TYT Y+IDE PTGTNAIVAVLA+TG+DMEDAM
Sbjct: 716 YSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAM 775
Query: 598 ILNKSSVERGMFHGQIYQTETVDLTEQGSRSDPSSRMFRKSN--IEKSKLDSDGLPHVGQ 655
ILNKSSVERGM HGQIYQTE +DL++Q SR D S+ FR+S E ++D+DGLP VGQ
Sbjct: 776 ILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPSVGQ 835
Query: 656 MIRPDEPYCSIYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVI 715
+ PDEPYCSIY+ T+ T +K+KG++PV VD+V+VD+K+KK Q+ NIRFRH RNP+I
Sbjct: 836 KLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPII 895
Query: 716 GDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG 775
GDKFSSRHGQKGVCSQLWPD+DMPF G TGMRPDLIINPHAFPSRMTIAMLLES+AAKGG
Sbjct: 896 GDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGG 955
Query: 776 SLHGEFVNATPFRGSVKKDNGESE-KSGLLLDDLGQMLREKGFNYHGLEVLYSGVYGKEL 834
SLHG+FV+ATPFR +VKK NGE E KS LL+DDLG ML+EKGFN++G E LYSG G EL
Sbjct: 956 SLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVEL 1015
Query: 835 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAH 894
CEIF+GPVYYQRLRHMVSDKFQVRSTG VDQ+T QP FGEMERDSLLAH
Sbjct: 1016 KCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAH 1075
Query: 895 GAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQ-PQKLPRREIGGLPPRKAPKKVICH 953
GA+YLLHDRLHT SD+HIADVCSLCGS+L +S + QK +EIG LPP + PKKV C+
Sbjct: 1076 GASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCY 1135
Query: 954 ACQTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLNN 990
+C+TSKGMETVAMPYVFRYLAAE A+MNIKMTL+L++
Sbjct: 1136 SCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1172
>AT5G45140.1 | Symbols: NRPC2 | nuclear RNA polymerase C2 |
chr5:18247416-18257713 REVERSE LENGTH=1161
Length = 1161
Score = 359 bits (922), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 277/962 (28%), Positives = 430/962 (44%), Gaps = 154/962 (16%)
Query: 106 IEEVRQLSLFTRLQCLNYIGEHFQPILTELKNDSYDTVAKAVLKDYVFVHL---DDNFDK 162
IEE + T+ Q L+Y+ + I + D A ++L+D H+ D+NF +
Sbjct: 278 IEECVSEGVNTQKQALDYLEAKVKKISYGTPPEK-DGRALSILRDLFLAHVPVPDNNFRQ 336
Query: 163 FNLLI-FMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQSGKDEMK 221
+ ML+++ + +D+ D + N+ + L G LI+L ++ + L +
Sbjct: 337 KCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVD 396
Query: 222 R------KSGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQQ----R 271
++ FDFS+ C +K +IS +E L TG D+++ R
Sbjct: 397 HILNKPIRASRFDFSQ------CLNKDSRYSISLGLERTLSTG------NFDIKRFRMHR 444
Query: 272 AGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTT-VRKLLPESWGFLCPVHTPDGEPCG 330
G T RL+++ + + F R + R L P WG LCP TP+GE CG
Sbjct: 445 KGMTQVLTRLSFIGSMGFITKI--SPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCG 502
Query: 331 LLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLLLPGPPEVLTVLL 390
L+ ++ +T+ + + +K+ ++ L++L + P+ V+L
Sbjct: 503 LVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHT----------PDSFLVIL 552
Query: 391 DGCIVGCIPSGEVEKIVAHIRELKVSSSAMIPDDLEVG-YVPLSMGGAYPGLYLFTSPSR 449
+G I+G + +R L+ + ++G +V + +Y+ + R
Sbjct: 553 NGLILG--KHSRPQYFANSLRRLRRAG--------KIGEFVSVFTNEKQHCVYVASDVGR 602
Query: 450 FVRP-----------------------------VRN--ISILSNENKNIDLIGPFEQVFM 478
RP +R+ I L +N LI +E
Sbjct: 603 VCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYES--- 659
Query: 479 EIRCPDG----GDGGRKSSFPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQMAKQ 534
DG +G + TH EI P +L VVA P+ HNQSPRN YQC M KQ
Sbjct: 660 -----DGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQ 714
Query: 535 TMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDME 594
M + +R D LY L PQ P++ T T D+ G NA VAV++++GYD+E
Sbjct: 715 AMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIE 774
Query: 595 DAMILNKSSVERG----------MFHGQIYQTETVDLTEQGSRSDPSSRMFRKSNIEKSK 644
DA+++NKSS++RG + Q Y T D R+ P + +
Sbjct: 775 DAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQ-------I 827
Query: 645 LDSDGLPHVGQMIRPDEPY---------CSIYNASTSSTH------TLKKKGSEPVYVDY 689
LD DGL G++IRP++ Y + + ++ S + K E VD
Sbjct: 828 LDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDR 887
Query: 690 VAVDVKNKKDLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPD 749
VA+ +KK + RH R P +GDKFSSRHGQKGVC + D PF G+ PD
Sbjct: 888 VAL-CSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPF-SELGICPD 945
Query: 750 LIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNATPFRGSVKKDNGESEKSGLLLDDLG 809
LI+NPH FPSRMT+ ++E + +K G G F + F GE ++ +
Sbjct: 946 LIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAF--------GERSGHADKVETIS 997
Query: 810 QMLREKGFNYHGLEVLYSGVYGKELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTR 869
L EKGF+Y G ++LYSG+ G+ + IF+GP+YYQ+L+HMV DK R +G +TR
Sbjct: 998 ATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTR 1057
Query: 870 QPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQ 929
QP GEMERD L+A+GA+ L+++RL SD VC CG + ++
Sbjct: 1058 QPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNY-- 1115
Query: 930 PQKLPRREIGGLPPRKAPKKVICHACQTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLN 989
KL KK +C C+ + T+ +PY + L E +MN+ LKL
Sbjct: 1116 --KL--------------KKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLT 1159
Query: 990 NG 991
Sbjct: 1160 EA 1161
>AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA
polymerase family protein | chr4:11535684-11542200
REVERSE LENGTH=1188
Length = 1188
Score = 296 bits (758), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 181/505 (35%), Positives = 253/505 (50%), Gaps = 53/505 (10%)
Query: 497 THEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQT 556
TH EIHP+ +L V A+ P+ DHNQSPRN YQ M KQ M Q R D Y L
Sbjct: 702 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 761
Query: 557 PQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQT 616
PQ P+V T + + P G NAIVA+ Y+GY+ ED++I+N+SS++RG F +++
Sbjct: 762 PQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 821
Query: 617 ETVDLTEQGS-------RSDPSSRMFRKSNIEKSKLDSDGLPHVGQMIRPDE-------P 662
+ + G+ R D S M + KLD DGL G + ++ P
Sbjct: 822 YRDEEKKMGTLVKEDFGRPDRGSTMGMRHG-SYDKLDDDGLAPPGTRVSGEDVIIGKTTP 880
Query: 663 YCSIYNASTSS-----THTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVIGD 717
SS H++ + SE VD V + N L+ V +R R R P IGD
Sbjct: 881 ISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLL-TTNADGLRFVKVRVRSVRIPQIGD 939
Query: 718 KFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSL 777
KFSSRHGQKG + DMP+ G+ PD+I+NPHA PSRMTI L+E + K +
Sbjct: 940 KFSSRHGQKGTVGMTYTQEDMPWT-IEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 998
Query: 778 HGEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLEVLYSGVYGKELTCE 837
G+ +ATPF + + +D++ + L + G+ G E +Y+G G+ LT
Sbjct: 999 MGKEGDATPF-------------TDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAM 1045
Query: 838 IFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAHGAA 897
IF+GP YYQRL+HMV DK R G V +TRQP FGEMERD ++AHGAA
Sbjct: 1046 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1105
Query: 898 YLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAPKKVICHACQT 957
+ L +RL SD + VC +CG ++A + ++ C C+
Sbjct: 1106 HFLKERLFDQSDAYRVHVCEVCG-LIAIANLKKNSFE-----------------CRGCKN 1147
Query: 958 SKGMETVAMPYVFRYLAAEFAAMNI 982
+ V +PY + L E +M I
Sbjct: 1148 KTDIVQVYIPYACKLLFQELMSMAI 1172
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 121/300 (40%), Gaps = 48/300 (16%)
Query: 57 LPVGIVLKALIDTSDLEIRTNLKSCYNEKYEKGKGAVGTQRVDDRARMIIEEVRQLSLFT 116
+P+ IV +AL +D +I ++ CY+ ++ + R +EE +
Sbjct: 272 IPIIIVFRALGFVADKDILEHI--CYD---------FADTQMMELLRPSLEEA--FVIQN 318
Query: 117 RLQCLNYIGEHFQPI-LTELKNDSYDTVAKAVLKDYVFVHLDD----NFDKFNLLIFMLQ 171
+L L+YIG+ + +T+ K Y A+ +L+ + H+ K +++
Sbjct: 319 QLVALDYIGKRGATVGVTKEKRIKY---ARDILQKEMLPHVGIGEHCETKKAYYFGYIIH 375
Query: 172 KLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQSGKDEMKRKSGTFDFSE 231
+L G D+ D N+ + L G L+ G M + T D
Sbjct: 376 RLLLCALGRRPEDDRDHYGNKRLDLAGPLL-------------GGLFRMLFRKLTRDVRS 422
Query: 232 IFVVKKCFDK---------TPARAISTSIENMLKTGRLVTNTGLDLQQRAGYTVQADRLN 282
V+KC D A+ I++ ++ L TG RAG + +RL
Sbjct: 423 --YVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLT 478
Query: 283 YLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRIT 342
Y LSH R ++ G + R+L WG +CP TP+G+ CGL+ ++ IT
Sbjct: 479 YASTLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 537
>AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B |
chr3:6195323-6200204 FORWARD LENGTH=1055
Length = 1055
Score = 270 bits (690), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 245/872 (28%), Positives = 385/872 (44%), Gaps = 90/872 (10%)
Query: 148 LKDYVFVHLDDNFDKFNLLIFMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKE 207
L+ Y+F L K L +M++ L S G +N DS +N+ + L G L+ ++
Sbjct: 236 LRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRV 295
Query: 208 KLEDWLQSGKDEMKRK-SGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGL 266
L + M+++ SG D I + D A I+ + TG ++
Sbjct: 296 HLAHARRKMTRAMQKQLSGDGDLKPI---EHYLD---ASVITNGLNRAFSTGAW-SHPFR 348
Query: 267 DLQQRAGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDG 326
+++ +G R N L+ L R + + G + R P WG +C + TPDG
Sbjct: 349 KMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARHPHPSHWGRVCFLSTPDG 407
Query: 327 EPCGLLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLLLPGPPEVL 386
E CGL+ +M+ + +QG S++++L GM +L+ P +
Sbjct: 408 ENCGLVKNMS----LLGLVSTQGLE--------SVVEMLFTCGMEELMNDTSTPLCGK-H 454
Query: 387 TVLLDGCIVGCIPSGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTS 446
VLL+G VG + E V ++ + S +P ++E+ + +FT
Sbjct: 455 KVLLNGDWVGLC--ADSESFVGELKSRRRQSE--LPLEMEI-----KRDKDDNEVRIFTD 505
Query: 447 PSRFVRPVRNISILSNENKNIDLIGPFEQVFMEIR-----------CPDGGDGGRKSSFP 495
R +RP+ + L ++ PF+ + + C + P
Sbjct: 506 AGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEP 565
Query: 496 A--THEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQM-AKQTMAFSSQTIQHRADQKLY 552
TH E+ + +L V P+++H+ R +YQ Q +Q + FSS R D
Sbjct: 566 KNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQ 625
Query: 553 HLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 612
L PQ P+ +T + G NAIVAV + GY+ ED++++NK+S+ERGMF +
Sbjct: 626 QLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSE 685
Query: 613 ---IYQTETVDLTEQGSRSDPSSRM-FRKSNIEKSKLDS---DGLPHVGQMIRPDEPYCS 665
Y+ E VD + R + F K+ + K+DS DG P +G + +
Sbjct: 686 QIRSYKAE-VDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIG 744
Query: 666 IYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVIGDKFSSRHGQ 725
S + H++K K +E V V + N + + R R+P +GDKFSS HGQ
Sbjct: 745 RCTES-GADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQ 802
Query: 726 KGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNAT 785
KGV L + PF G+ PD++INPHAFPSR T LLE+ +KG A
Sbjct: 803 KGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKG--------IAC 853
Query: 786 PFRGSVKKDNGESEKSGLL-----------LDDLGQMLREKGFNYHGLEVLYSGVYGKEL 834
P ++K G S L + ++ + L GF+ G E +Y+G G+ +
Sbjct: 854 P----IQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMM 909
Query: 835 TCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAH 894
IF+GP +YQRL HM +K + R+TG V +TRQP FGEMERD L+AH
Sbjct: 910 RSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAH 969
Query: 895 GAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAPKKVICHA 954
GA+ LH+RL T SD +C C + + I+ R+I G C
Sbjct: 970 GASANLHERLFTLSDSSQMHICRKCKTY--ANVIERTPSSGRKIRG---------PYCRV 1018
Query: 955 CQTSKGMETVAMPYVFRYLAAEFAAMNIKMTL 986
C +S + V +PY + L E +M I +
Sbjct: 1019 CASSDHVVRVYVPYGAKLLCQELFSMGITLNF 1050
>AT3G23780.2 | Symbols: NRPD2A | nuclear RNA polymerase D2A |
chr3:8567971-8573819 REVERSE LENGTH=1172
Length = 1172
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 242/861 (28%), Positives = 384/861 (44%), Gaps = 75/861 (8%)
Query: 151 YVFVHLDDNFDKFNLLIFMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLE 210
Y+F L K L +M++ L + G +N DS +N+ + L G L+ ++ L
Sbjct: 357 YLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLA 416
Query: 211 DWLQSGKDEMKRK-SGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQ 269
+ M++ SG D I + D A I+ + TG ++ ++
Sbjct: 417 HARRKMTRAMQKHLSGDGDLKPI---EHYLD---ASVITNGLSRAFSTGAW-SHPFRKME 469
Query: 270 QRAGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPC 329
+ +G R N L+ L R + + G + R P WG +C + TPDGE C
Sbjct: 470 RVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCFLSTPDGENC 528
Query: 330 GLLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLLLP--GPPEVLT 387
GL+ +M+ +++ S++ S+++ L GM +L+ P G +VL
Sbjct: 529 GLVKNMSLLGLVSTQ-----SLE-------SVVEKLFACGMEELMDDTCTPLFGKHKVL- 575
Query: 388 VLLDGCIVG-CIPSGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTS 446
L+G VG C S E VA ++ + S +P ++E+ + +FT
Sbjct: 576 --LNGDWVGLCADS---ESFVAELKSRRRQSE--LPREMEI-----KRDKDDNEVRIFTD 623
Query: 447 PSRFVRPVRNISILSNENKNIDLIGPFEQVF-------------MEIRCPDGGDGGRKSS 493
R +RP+ + L + PF+ + + G K
Sbjct: 624 AGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEP 683
Query: 494 FPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQM-AKQTMAFSSQTIQHRADQKLY 552
TH E+ + +L V P+++H+ R +YQ Q +Q + FSS R D
Sbjct: 684 KIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQ 743
Query: 553 HLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 612
L PQ P+ +T + G NAIVAV + GY+ ED++++NK+S+ERGMF +
Sbjct: 744 QLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSE 803
Query: 613 ---IYQTETVDLTEQGSRSDPSSRM-FRKSNIEKSKLDS---DGLPHVGQMIRPDEPYCS 665
Y+ E VD + R + F K++ + K+DS DG P +G + +
Sbjct: 804 QIRSYKAE-VDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIG 862
Query: 666 IYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVIGDKFSSRHGQ 725
S + H++K K +E V V + N + + R R+P +GDKFSS HGQ
Sbjct: 863 RCTES-GADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQ 920
Query: 726 KGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNAT 785
KGV L + PF G+ PD++INPHAFPSR T LLE+ +KG + + ++
Sbjct: 921 KGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSS 979
Query: 786 PFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLEVLYSGVYGKELTCEIFIGPVYY 845
+ + G+ ++ + L GF+ G E +Y+G G+ + IF+GP +Y
Sbjct: 980 AAYTKLTRHATPFSTPGVT--EITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFY 1037
Query: 846 QRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLH 905
QRL HM DK + R+TG V +TRQP FGEMERD L+AHGA+ LH+RL
Sbjct: 1038 QRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLF 1097
Query: 906 TCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAPKKVICHACQTSKGMETVA 965
T SD +C C + + I+ R+I G C C +S + V
Sbjct: 1098 TLSDSSQMHICRKCKTY--ANVIERTPSSGRKIRG---------PYCRVCVSSDHVVRVY 1146
Query: 966 MPYVFRYLAAEFAAMNIKMTL 986
+PY + L E +M I +
Sbjct: 1147 VPYGAKLLCQELFSMGITLNF 1167
>AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclear RNA
polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172
Length = 1172
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 242/861 (28%), Positives = 384/861 (44%), Gaps = 75/861 (8%)
Query: 151 YVFVHLDDNFDKFNLLIFMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLE 210
Y+F L K L +M++ L + G +N DS +N+ + L G L+ ++ L
Sbjct: 357 YLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLA 416
Query: 211 DWLQSGKDEMKRK-SGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQ 269
+ M++ SG D I + D A I+ + TG ++ ++
Sbjct: 417 HARRKMTRAMQKHLSGDGDLKPI---EHYLD---ASVITNGLSRAFSTGAW-SHPFRKME 469
Query: 270 QRAGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPC 329
+ +G R N L+ L R + + G + R P WG +C + TPDGE C
Sbjct: 470 RVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCFLSTPDGENC 528
Query: 330 GLLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLLLP--GPPEVLT 387
GL+ +M+ +++ S++ S+++ L GM +L+ P G +VL
Sbjct: 529 GLVKNMSLLGLVSTQ-----SLE-------SVVEKLFACGMEELMDDTCTPLFGKHKVL- 575
Query: 388 VLLDGCIVG-CIPSGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTS 446
L+G VG C S E VA ++ + S +P ++E+ + +FT
Sbjct: 576 --LNGDWVGLCADS---ESFVAELKSRRRQSE--LPREMEI-----KRDKDDNEVRIFTD 623
Query: 447 PSRFVRPVRNISILSNENKNIDLIGPFEQVF-------------MEIRCPDGGDGGRKSS 493
R +RP+ + L + PF+ + + G K
Sbjct: 624 AGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEP 683
Query: 494 FPATHEEIHPTGMLSVVANRTPWSDHNQSPRNMYQCQM-AKQTMAFSSQTIQHRADQKLY 552
TH E+ + +L V P+++H+ R +YQ Q +Q + FSS R D
Sbjct: 684 KIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQ 743
Query: 553 HLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 612
L PQ P+ +T + G NAIVAV + GY+ ED++++NK+S+ERGMF +
Sbjct: 744 QLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSE 803
Query: 613 ---IYQTETVDLTEQGSRSDPSSRM-FRKSNIEKSKLDS---DGLPHVGQMIRPDEPYCS 665
Y+ E VD + R + F K++ + K+DS DG P +G + +
Sbjct: 804 QIRSYKAE-VDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIG 862
Query: 666 IYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVIGDKFSSRHGQ 725
S + H++K K +E V V + N + + R R+P +GDKFSS HGQ
Sbjct: 863 RCTES-GADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQ 920
Query: 726 KGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNAT 785
KGV L + PF G+ PD++INPHAFPSR T LLE+ +KG + + ++
Sbjct: 921 KGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSS 979
Query: 786 PFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLEVLYSGVYGKELTCEIFIGPVYY 845
+ + G+ ++ + L GF+ G E +Y+G G+ + IF+GP +Y
Sbjct: 980 AAYTKLTRHATPFSTPGVT--EITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFY 1037
Query: 846 QRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAHGAAYLLHDRLH 905
QRL HM DK + R+TG V +TRQP FGEMERD L+AHGA+ LH+RL
Sbjct: 1038 QRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLF 1097
Query: 906 TCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAPKKVICHACQTSKGMETVA 965
T SD +C C + + I+ R+I G C C +S + V
Sbjct: 1098 TLSDSSQMHICRKCKTY--ANVIERTPSSGRKIRG---------PYCRVCVSSDHVVRVY 1146
Query: 966 MPYVFRYLAAEFAAMNIKMTL 986
+PY + L E +M I +
Sbjct: 1147 VPYGAKLLCQELFSMGITLNF 1167
>ATCG00190.1 | Symbols: RPOB | RNA polymerase subunit beta |
chrC:23111-26329 REVERSE LENGTH=1072
Length = 1072
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 157/398 (39%), Gaps = 46/398 (11%)
Query: 574 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM---FHGQIYQTETVDLTEQG----S 626
E G N +VA + + GY+ EDA+++++ V + FH + Y+ +T +T QG +
Sbjct: 650 ELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQT-HVTTQGPERIT 708
Query: 627 RSDP--SSRMFRKSNIEKSKLDSDGLPHVGQMIR----------PDEPYCSIY------- 667
+ P R+ R LD +G+ +G + P S Y
Sbjct: 709 KEIPHLEGRLLRN-------LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLL 761
Query: 668 ------NASTSSTHTLKKK-GSEPVYVDYVAVDVKNKKDLQKVNIR--FRHPRNPVIGDK 718
STS LK G +D V K IR R +GDK
Sbjct: 762 RAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDK 821
Query: 719 FSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLH 778
+ RHG KG+ S++ P DMP+ G D++ NP PSRM + + E GSL
Sbjct: 822 VAGRHGNKGIISKILPRQDMPYL-QDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLL 880
Query: 779 GEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFN--YHGLEVLYSGVYGKELTC 836
PF +++ L + Q F Y G ++ G G
Sbjct: 881 DRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQ 940
Query: 837 EIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPXXXXXXXXXXXFGEMERDSLLAHGA 896
+ IG Y +L H V DK RS+G VT+QP GEME +L G
Sbjct: 941 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 1000
Query: 897 AYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLP 934
A++L + L SD+ A L +++ + +P+ P
Sbjct: 1001 AHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAP 1038