Miyakogusa Predicted Gene

Lj3g3v1896450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1896450.1 Non Chatacterized Hit- tr|I1M0N0|I1M0N0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55983 PE,88.62,0,no
description,NULL; RNase_T,Exonuclease, RNase T/DNA polymerase III;
zf-GRF,Zinc finger, GRF-type; ,CUFF.43408.1
         (411 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15140.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    95   9e-20

>AT3G15140.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:5099712-5101717
           REVERSE LENGTH=337
          Length = 337

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 27/215 (12%)

Query: 123 AQSYPREQFQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRP 182
           A    R++ QEF +F+VID E            EI+EFP +IV + T ++   F  +VRP
Sbjct: 115 AADLERKKSQEFNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRP 165

Query: 183 T------CNQHLTDFCKDLTGIQQIQVDRGVTLSEA-------LLRHDKWLEKK--GIKN 227
           T       N+++     +L G+ ++  D  +   +        L  HD W +    G+ +
Sbjct: 166 TKMSEQAINKYIEGKYGEL-GVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLND 224

Query: 228 ANFAVVTWSNWDCRVMLESECRFKKIRKPPYFNRWINLRIPFREVFGAVKCNLKEAVEIA 287
           A F  VT  NWD +  +  +C    I  PPYF  WINL+  +   +G     +   +   
Sbjct: 225 AAF--VTCGNWDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQC 282

Query: 288 GLAWQGRAHCGLDDAKNTARLLALLMHKGFKFSIT 322
           G+   G  H G+DD KN  R++  ++ +G    +T
Sbjct: 283 GIKLMGSHHLGIDDTKNITRVVQRMLSEGAVLKLT 317