Miyakogusa Predicted Gene

Lj3g3v1896330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1896330.1 Non Chatacterized Hit- tr|I1MIM1|I1MIM1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46928
PE,85.66,0,seg,NULL; RB_A,Retinoblastoma-associated protein, A-box;
RB_B,Retinoblastoma-associated protein, B-b,CUFF.43275.1
         (1022 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.2 | Symbols: RBR1 | retinoblastoma-related 1 | chr3:39...  1321   0.0  
AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1, RB1 | retinoblasto...  1316   0.0  

>AT3G12280.2 | Symbols: RBR1 | retinoblastoma-related 1 |
            chr3:3913671-3918433 REVERSE LENGTH=1012
          Length = 1012

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1029 (66%), Positives = 784/1029 (76%), Gaps = 32/1029 (3%)

Query: 9    MEDVKPSVD-----NADQADSRFADFCKNGLALDEKSCKEAMNLFGKTKHILLTNVSSMG 63
            ME+V+P V      N  ++++   D C+  L+LD  +C EA+ LF +TK IL  ++S++G
Sbjct: 1    MEEVQPPVTPPIEPNGKRSEASLLDICEKVLSLDGSTCDEALKLFTETKRILSASMSNIG 60

Query: 64   NGTSEDAERYWFAFILYSVKRLTQNSEESGQEEVENTGLTLCRILRAANLNIADFSKELS 123
            +GT E+ ER+WFAFILYSVKRL+   E  G     +    LC+ILRA  LNI DF KEL 
Sbjct: 61   SGTREEVERFWFAFILYSVKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFKELP 120

Query: 124  QFVVKAGQILSNLYGTDWENWLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANVEKNS 183
            QFVVKAG +L  LYG DWEN L+AKE+ AN   L +LSKYYKR F EFF+  DAN EKNS
Sbjct: 121  QFVVKAGSVLGELYGADWENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAEKNS 180

Query: 184  I-VTVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILIIHVPARFRNFNIN 242
               + +  D +RFGWLLFLALR HAFSRF +LVTC+NG++SILAILIIHVP RFRNF+I 
Sbjct: 181  ANSSTYLLDSYRFGWLLFLALRNHAFSRFKDLVTCSNGVVSILAILIIHVPCRFRNFSIQ 240

Query: 243  DSSRFVKKSSKGVDLLASLCKIYNTSEDELRKTMEIANSLIADILKKKPCLASECETENL 302
            DSSRFVKK  KGVDL+ASLCKIY+ SEDELR  ++ AN+L+  ILKKKP  ASEC+T+ L
Sbjct: 241  DSSRFVKKGDKGVDLVASLCKIYDASEDELRIVIDKANNLVETILKKKPSPASECQTDKL 300

Query: 303  ENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDERLFVNEDDRXXXXXXXX 362
            +N D D LTYF+DL+EE S+ +SL  LEKDY      KGELDER+F+NE+D         
Sbjct: 301  DNIDPDGLTYFEDLLEETSISTSLITLEKDY---YDGKGELDERVFINEEDSLLGSGSLS 357

Query: 363  XXXXXXXXXKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVSTAMTT 422
                     KRK D+++SPA+T +SPLSPH+SPA+  NGI G+T     AATPVSTAMTT
Sbjct: 358  AGAVNITGVKRKIDALSSPARTFISPLSPHKSPAAKTNGISGATK---LAATPVSTAMTT 414

Query: 423  AKWLRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFPSSPLGERCVTGGL 482
            AKWLRTVISPL PKPS  LE FL SCDRDIT+DV RR  IIL+AIFP+S LG +C  G L
Sbjct: 415  AKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQCGGGSL 474

Query: 483  QSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSA 542
            Q+ +LMD+IWAEQRRLEA KLYYRVLEAMC+AEAQ LHA NL SLLTNERFHRCMLACSA
Sbjct: 475  QAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSA 534

Query: 543  ELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLES 602
            ELVLATHKT+TMLFPAVLERTGITAFDLSKVIESFIRHE+SLPRELRRHLNSLEERLLES
Sbjct: 535  ELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLES 594

Query: 603  MVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPTLPKF 662
            MVWEKGSSMYNSL VARP+L+ EIN+LGLLAEPMPSLD IA  INFS G      ++ K 
Sbjct: 595  MVWEKGSSMYNSLIVARPSLALEINQLGLLAEPMPSLDAIAALINFSDGA-NHASSVQKH 653

Query: 663  ETSPIQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRXXXXXXXXXXXXXXXXXXXXXXX 722
            ET P QNG  RSPKRLCT++R++LVERNSF SPVKDR                       
Sbjct: 654  ETCPGQNGGIRSPKRLCTDYRSILVERNSFTSPVKDR-LLALGNVKSKMLPPPLQSAFAS 712

Query: 723  XTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQ 782
             T+PNPGGGGETCAETGINIFF KI KL AVRI+GMVERLQLSQQIRE+VYC FQ +L Q
Sbjct: 713  PTRPNPGGGGETCAETGINIFFTKINKLAAVRINGMVERLQLSQQIRESVYCFFQHVLAQ 772

Query: 783  WTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPHCKPQVFRSVFVDWSSAR 842
             TSL F+RHIDQIILCCFYGVAKISQ+SLTFREIIYNYRKQP CKP VFRSV+VD    R
Sbjct: 773  RTSLLFSRHIDQIILCCFYGVAKISQMSLTFREIIYNYRKQPQCKPLVFRSVYVDALQCR 832

Query: 843  RNGACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEV-NKNDAHCPG 901
            R G    RIG DHVDII+FYNE+FIP+VKPLLVELGP    +++DR  E  NK +  CPG
Sbjct: 833  RQG----RIGPDHVDIITFYNEIFIPAVKPLLVELGP----VRNDRAVEANNKPEGQCPG 884

Query: 902  SPKISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPS 961
            SPK+S FPS+PDMSPKKVSA HNVYVSPLR SKMDALISHS+KSYYACVGESTHAYQSPS
Sbjct: 885  SPKVSVFPSVPDMSPKKVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHAYQSPS 944

Query: 962  KDLTAINNRLNGNRKVRGALNFDDADVGLVSDSLVSNSLYQQ--------NXXXXXXXXA 1013
            KDL+AINNRLN +   +  LNF DA+ G+VSDS+V+NSL  Q        +        A
Sbjct: 945  KDLSAINNRLNNSSNRKRTLNF-DAEAGMVSDSMVANSLNLQNQNQNQNGSDASSSGGAA 1003

Query: 1014 PLKSELLDS 1022
            PLK+E  DS
Sbjct: 1004 PLKTEPTDS 1012


>AT3G12280.1 | Symbols: RBR1, RBR, RB, ATRBR1, RB1 |
            retinoblastoma-related 1 | chr3:3913671-3918433 REVERSE
            LENGTH=1013
          Length = 1013

 Score = 1316 bits (3406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/1030 (65%), Positives = 781/1030 (75%), Gaps = 33/1030 (3%)

Query: 9    MEDVKPSVD-----NADQADSRFADFCKNGLALDEKSCKEAMNLFGKTKHILLTNVSSMG 63
            ME+V+P V      N  ++++   D C+  L+LD  +C EA+ LF +TK IL  ++S++G
Sbjct: 1    MEEVQPPVTPPIEPNGKRSEASLLDICEKVLSLDGSTCDEALKLFTETKRILSASMSNIG 60

Query: 64   NGTSEDAERYWFAFILYSVKRLTQNSEESGQEEVENTGLTLCRILRAANLNIADFSKELS 123
            +GT E+ ER+WFAFILYSVKRL+   E  G     +    LC+ILRA  LNI DF KEL 
Sbjct: 61   SGTREEVERFWFAFILYSVKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFKELP 120

Query: 124  QFVVKAGQILSNLYGTDWENWLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANVEKNS 183
            QFVVKAG +L  LYG DWEN L+AKE+ AN   L +LSKYYKR F EFF+  DAN EKNS
Sbjct: 121  QFVVKAGSVLGELYGADWENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAEKNS 180

Query: 184  I-VTVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILIIHVPARFRNFNIN 242
               + +  D +RFGWLLFLALR HAFSRF +LVTC+NG++SILAILIIHVP RFRNF+I 
Sbjct: 181  ANSSTYLLDSYRFGWLLFLALRNHAFSRFKDLVTCSNGVVSILAILIIHVPCRFRNFSIQ 240

Query: 243  DSSRFVKKSSKGVDLLASLCKIYNTSEDELRKTMEIANSLIADILKKKPCLASECETENL 302
            DSSRFVKK  KGVDL+ASLCKIY+ SEDELR  ++ AN+L+  ILKKKP  ASEC+T+ L
Sbjct: 241  DSSRFVKKGDKGVDLVASLCKIYDASEDELRIVIDKANNLVETILKKKPSPASECQTDKL 300

Query: 303  ENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDERLFVNEDDRXXXXXXXX 362
            +N D D LTYF+DL+EE S+ +SL  LEKDY      KGELDER+F+NE+D         
Sbjct: 301  DNIDPDGLTYFEDLLEETSISTSLITLEKDY---YDGKGELDERVFINEEDSLLGSGSLS 357

Query: 363  XXXXXXXXXKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVSTAMTT 422
                     KRK D+++SPA+T +SPLSPH+SPA+  NGI G+T     AATPVSTAMTT
Sbjct: 358  AGAVNITGVKRKIDALSSPARTFISPLSPHKSPAAKTNGISGATK---LAATPVSTAMTT 414

Query: 423  AKWLRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFPSSPLGERCVTGGL 482
            AKWLRTVISPL PKPS  LE FL SCDRDIT+DV RR  IIL+AIFP+S LG +C  G L
Sbjct: 415  AKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQCGGGSL 474

Query: 483  QSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSA 542
            Q+ +LMD+IWAEQRRLEA KLYYRVLEAMC+AEAQ LHA NL SLLTNERFHRCMLACSA
Sbjct: 475  QAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSA 534

Query: 543  ELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLES 602
            ELVLATHKT+TMLFPAVLERTGITAFDLSKVIESFIRHE+SLPRELRRHLNSLEERLLES
Sbjct: 535  ELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLES 594

Query: 603  MVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPTLPKF 662
            MVWEKGSSMYNSL VARP+L+ EIN+LGLLAEPMPSLD IA  INFS G      ++ K 
Sbjct: 595  MVWEKGSSMYNSLIVARPSLALEINQLGLLAEPMPSLDAIAALINFSDGA-NHASSVQKH 653

Query: 663  ETSPIQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRXXXXXXXXXXXXXXXXXXXXXXX 722
            ET P QNG  RSPKRLCT++R++LVERNSF SPVKDR                       
Sbjct: 654  ETCPGQNGGIRSPKRLCTDYRSILVERNSFTSPVKDR-LLALGNVKSKMLPPPLQSAFAS 712

Query: 723  XTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQ 782
             T+PNPGGGGETCAETGINIFF KI KL AVRI+GMVERLQLSQQIRE+VYC FQ +L Q
Sbjct: 713  PTRPNPGGGGETCAETGINIFFTKINKLAAVRINGMVERLQLSQQIRESVYCFFQHVLAQ 772

Query: 783  WTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPHCKPQVFRSVFVDWSSAR 842
             TSL F+RHIDQIILCCFYGVAKISQ+SLTFREIIYNYRKQP CKP VFRSV+VD    R
Sbjct: 773  RTSLLFSRHIDQIILCCFYGVAKISQMSLTFREIIYNYRKQPQCKPLVFRSVYVDALQCR 832

Query: 843  RNGACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEV-NKNDAHCPG 901
            R G    RIG DHVDII+FYNE+FIP+VKPLLVELGP    +++DR  E  NK +  CPG
Sbjct: 833  RQG----RIGPDHVDIITFYNEIFIPAVKPLLVELGP----VRNDRAVEANNKPEGQCPG 884

Query: 902  SPKISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPS 961
            SPK+S FPS+PDMSPKKVSA HNVYVSPLR SKMDALISHS+KSYYACVGESTHAYQSPS
Sbjct: 885  SPKVSVFPSVPDMSPKKVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHAYQSPS 944

Query: 962  KDLTAI-NNRLNGNRKVRGALNFDDADVGLVSDSLVSNSLYQQ--------NXXXXXXXX 1012
            KDL+AI N   N +   +  LNF DA+ G+VSDS+V+NSL  Q        +        
Sbjct: 945  KDLSAINNRLNNSSSNRKRTLNF-DAEAGMVSDSMVANSLNLQNQNQNQNGSDASSSGGA 1003

Query: 1013 APLKSELLDS 1022
            APLK+E  DS
Sbjct: 1004 APLKTEPTDS 1013