Miyakogusa Predicted Gene

Lj3g3v1833060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1833060.1 tr|B9MTA3|B9MTA3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_675990 PE=4
SV=1,44.19,2e-17,DUF1685,Protein of unknown function DUF1685;
seg,NULL,CUFF.43180.1
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42760.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   106   1e-23

>AT2G42760.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF1685
           (InterPro:IPR012881); Has 170 Blast hits to 164 proteins
           in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26;
           Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes
           - 26 (source: NCBI BLink). | chr2:17796382-17797185
           REVERSE LENGTH=267
          Length = 267

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 15/180 (8%)

Query: 77  PPQYKLRTIPSGREIRDFSKGSSCENYEKEGINTRIKQRHGHGRRVSTSNKGKNTSRSLT 136
           P   KL+TI SG+E+  F+        E+E + +  +++     +   SN      +S++
Sbjct: 97  PTPMKLQTILSGKEVNAFTIA------ERERLLSEKEEQRKK--KKKKSNVRTRKGKSMS 148

Query: 137 ELEFKELKGFMDLGFVFSEED-KNSGLVSLIPGLHRLGSRXXXXXXXXXXXXXXXXXXXT 195
           +LE++ELKGFMDLGFVFSE+D K+S LVS++PGL RL  +                    
Sbjct: 149 DLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQRLVKKDDGVTKEEEEEEEEDKIGGN 208

Query: 196 VISDHKPYLSEAWDVLYRRRGRRN--PLLDWRV--PDSGSEIDMKHSLRFWAHSVASIVR 251
             +  +PYLSEAWD    R+G++   P + WRV  P + SE+D+K +LR WAH+VAS +R
Sbjct: 209 RAA--RPYLSEAWDHCGGRKGKKQITPEIKWRVPAPAAASEVDLKDNLRLWAHAVASTIR 266