Miyakogusa Predicted Gene

Lj3g3v1820590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1820590.1 Non Chatacterized Hit- tr|F6HP94|F6HP94_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,53.06,3e-19,Exostosin,Exostosin-like,CUFF.43167.1
         (100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22580.1 | Symbols:  | Exostosin family protein | chr4:118893...    96   4e-21
AT2G29040.1 | Symbols:  | Exostosin family protein | chr2:124724...    49   7e-07

>AT4G22580.1 | Symbols:  | Exostosin family protein |
           chr4:11889382-11890689 REVERSE LENGTH=435
          Length = 435

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 9   AGFSATPNIRSTIRTECHNGTGNTAYRYDKLCDVVDGSNGVCEHGPKRFMRPMSQASFCL 68
            G S++PNIR +IR EC   + N     +K+CD VD SNG+CEH P RFMRPM Q+SFCL
Sbjct: 257 GGTSSSPNIRRSIRLEC--TSINATQSDNKICDFVDCSNGICEHDPIRFMRPMLQSSFCL 314

Query: 69  QTRG-TSTRGSTYEAILVVCMLVFFKGLSAKSQ 100
           Q  G T TR +T++ I+  C+ VFF+  +AK Q
Sbjct: 315 QPPGDTPTRKATFDGIIAGCIPVFFEDQTAKMQ 347


>AT2G29040.1 | Symbols:  | Exostosin family protein |
           chr2:12472425-12474962 REVERSE LENGTH=720
          Length = 720

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 15  PNIRSTIRTECHNGTGNTAYRYDKLCDVVDGSNGVCEHGPKRFMRPMSQASFCLQTRGTS 74
           PN+  +IRTE  +     + R  KL + + GS     + P + M+    ++FCLQ  G S
Sbjct: 510 PNLGDSIRTEIMDQC-KASKRKCKLLECISGSQKC--YKPDQIMKFFLSSTFCLQPPGDS 566

Query: 75  -TRGSTYEAILVVCMLVFFKGLSAKSQ 100
            TR ST+++IL  C+ VFF   SA +Q
Sbjct: 567 YTRRSTFDSILAGCIPVFFHPGSAYAQ 593