Miyakogusa Predicted Gene

Lj3g3v1739290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1739290.1 tr|D8TSE5|D8TSE5_VOLCA Zinc finger related
protein OS=Volvox carteri GN=ard1 PE=4 SV=1,22.68,3e-17,SUBFAMILY NOT
NAMED,NULL; ARSENITE-RESISTANCE PROTEIN 2,NULL; DUF3546,Protein of
unknown function DU,CUFF.43058.1
         (660 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE...   554   e-158

>AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE) |
           chr2:11572587-11576357 FORWARD LENGTH=720
          Length = 720

 Score =  554 bits (1427), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 310/547 (56%), Positives = 369/547 (67%), Gaps = 39/547 (7%)

Query: 129 DDRFGYDNSXXXXXXXXXXXXXXDDKSYGRFGHRSAGEYQNGISDVESNRG-YADLP-SG 186
           D RFGYD+               D++ +GRF     G YQ    D E  RG Y D   SG
Sbjct: 137 DRRFGYDHGGGYDREMGGRPGYGDERPHGRF----MGRYQ----DWEGGRGGYGDASNSG 188

Query: 187 SAQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRTYFNSHKDEEWLKDKYH 246
           + QR+GLMSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR +FN+HK+E+WLK+KYH
Sbjct: 189 NPQRDGLMSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYH 248

Query: 247 PTNLLTVIERRNENARQLAKDFLLDLQSGTLDLNPGLXXXXXXXXXXXXEPNSDEEADNA 306
           PTNLL+VIERRN+ A+++AKDFLLDLQSGTLDL P +            EPNS++EA   
Sbjct: 249 PTNLLSVIERRNDLAQKVAKDFLLDLQSGTLDLGPAV--TALNKSGRTSEPNSEDEAAGV 306

Query: 307 GKRKRHGRGSNKEND-FSAAPKAHSISLEPRRIQADIQQAQTLVRKLDIEKGIADNILCN 365
           GKRKRHG G  KEN+  SAAPKA S + +P+RI  D++Q Q LVRKLD EK I +N+L  
Sbjct: 307 GKRKRHGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQG 366

Query: 366 SDLNKND-DKTHRGSVGPIIILRGLSSVKGLEGVELLDTLITYLWRIHGVDYYGLIETIE 424
           S+  K+  +K H GS GP++I+RGL+SVKGLEGVELLDTL+TYLWR+HG+DYYG +ET E
Sbjct: 367 SETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNE 426

Query: 425 AKGFRHVRPEGTTHXXXXXXXXXXXXXLDSFWQGRLNGQDPVEVMTXXXXXXXXXXXXLD 484
           AKG RHVR EG                 DS WQ RL GQDP+EVM             LD
Sbjct: 427 AKGLRHVRAEGKV---SDAKGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALD 483

Query: 485 PYIRKIRDEKYGWKYGCGAKGCTKLFHASEFVHKHLKLKHPELAVEQTTKVREDLYFQNY 544
           P++RKIRDEKYGWKYGCGAKGCTKLFHA+EFV+KHLKLKH EL  E TTKVRE+LYFQNY
Sbjct: 484 PHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNY 543

Query: 545 MNDPDAPGGKPVMQQT-QRDKPLKRRLGIEGRLRDDRGSR-------QNHDRSDRLNDGD 596
           MNDP+APGG+P  QQ+  RD+P++R+  +E RLRDDRG R         +DR+DR  D  
Sbjct: 544 MNDPNAPGGQPATQQSGPRDRPIRRKPSMENRLRDDRGGRRERDGRANGNDRNDRSEDQQ 603

Query: 597 RPENSPSRERQSKALEMGNHDETMYDTYAGPG---VSPFASDXXXXXXXXXXXGAEPLGP 653
           R +N           + GN  E  YD + G G   V PF SD           GA PLGP
Sbjct: 604 RGDN-----------DGGNPGEVGYDAFGGQGGVHVPPFLSDINPPPMLMPVPGAGPLGP 652

Query: 654 FVPAPPE 660
           FVPAPPE
Sbjct: 653 FVPAPPE 659