Miyakogusa Predicted Gene

Lj3g3v1729100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1729100.1 tr|A4S1R9|A4S1R9_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_42421,47.13,5e-17,seg,NULL; coiled-coil,NULL,TC74779.path1.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c...    89   8e-19

>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
            chr5:4122747-4128660 FORWARD LENGTH=1255
          Length = 1255

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1    MQCATAVEPHWLAELGPMFFSVKESDTSLLXXXXXXXXXXXXXXXXXXNLKKVXXXXXXX 60
            MQCAT+VEPHWLAELGPMFFSVK+SDTS+L                   L++        
Sbjct: 1161 MQCATSVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKSGMEEEMEKLRRDQVESELR 1220

Query: 61   XXXXXXXXXXXHQQQISMPGLRKGSSTYLRPKKFGL 96
                        QQQIS PGL+KG +T+LRPKK GL
Sbjct: 1221 SKERERKKRAKQQQQISGPGLKKG-TTFLRPKKLGL 1255