Miyakogusa Predicted Gene

Lj3g3v1683560.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1683560.1 tr|B9HP97|B9HP97_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650201 PE=4
SV=1,75,9e-19,seg,NULL,CUFF.42987.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52370.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    87   2e-18
AT5G58990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    84   1e-17

>AT5G52370.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr5:21260558-21261203 REVERSE LENGTH=142
          Length = 142

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 39/43 (90%)

Query: 54 NLFEVAQFLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
          NL EVAQFLPNWGIGYHMAK HW  I+YEITKINLYKDG+HGK
Sbjct: 52 NLIEVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGK 94


>AT5G58990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:23815028-23815819
           FORWARD LENGTH=148
          Length = 148

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 55  LFEVAQFLPNWGIGYHMAKTHWKEITYEITKINLYKDGKHGK 96
           L EVAQFLPNWGIGYHMAK HW  I+YEITKINLYKDG+HGK
Sbjct: 59  LIEVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGK 100