Miyakogusa Predicted Gene

Lj3g3v1682540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1682540.1 tr|A4RTY0|A4RTY0_OSTLU MPT family transporter:
inner membrane translocase (Import) Tim10 OS=Ostreoco,50.68,5e-18,no
description,Mitochondrial inner membrane translocase complex,
Tim8/9/10/13-zinc finger-like; SUBF,CUFF.42994.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29530.2 | Symbols: TIM10 | Tim10/DDP family zinc finger prot...   132   3e-32
AT2G29530.1 | Symbols: TIM10 | Tim10/DDP family zinc finger prot...   132   3e-32
AT2G29530.3 | Symbols: TIM10 | Tim10/DDP family zinc finger prot...   117   1e-27

>AT2G29530.2 | Symbols: TIM10 | Tim10/DDP family zinc finger
          protein | chr2:12641026-12642243 REVERSE LENGTH=83
          Length = 83

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 1  MAAP-PSALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDR 59
          MA+P P  + KEQ F MA+ EMEYRVELFNK+ QTCFNKCV+ RYKE+ELNMGENSCIDR
Sbjct: 1  MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDR 60

Query: 60 CVSKYWHVTNLIGQLLGSGRPPM 82
          CVSKYW V  ++GQLL +G+PP+
Sbjct: 61 CVSKYWQVNGMVGQLLSAGKPPV 83


>AT2G29530.1 | Symbols: TIM10 | Tim10/DDP family zinc finger
          protein | chr2:12641026-12642243 REVERSE LENGTH=83
          Length = 83

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 1  MAAP-PSALDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVENRYKESELNMGENSCIDR 59
          MA+P P  + KEQ F MA+ EMEYRVELFNK+ QTCFNKCV+ RYKE+ELNMGENSCIDR
Sbjct: 1  MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDR 60

Query: 60 CVSKYWHVTNLIGQLLGSGRPPM 82
          CVSKYW V  ++GQLL +G+PP+
Sbjct: 61 CVSKYWQVNGMVGQLLSAGKPPV 83


>AT2G29530.3 | Symbols: TIM10 | Tim10/DDP family zinc finger protein
           | chr2:12641026-12642243 REVERSE LENGTH=107
          Length = 107

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 69/107 (64%), Gaps = 25/107 (23%)

Query: 1   MAAP-PSALDKEQIFGMAEKEMEYRVELFNK------------------------MTQTC 35
           MA+P P  + KEQ F MA+ EMEYRVELFN                         + QTC
Sbjct: 1   MASPIPVGVTKEQAFSMAQTEMEYRVELFNNDIYKLEEYKFETADMSKILRLPELLAQTC 60

Query: 36  FNKCVENRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 82
           FNKCV+ RYKE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Sbjct: 61  FNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 107