Miyakogusa Predicted Gene

Lj3g3v1670380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1670380.1 tr|C1MW30|C1MW30_MICPC Chloroplast envelope
protein translocase family OS=Micromonas pusilla
(strain,24.6,9e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; SORTING AND
ASSEMBLY MACHINERY (SAM50) PROTEIN,NULL,CUFF.42985.1
         (445 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46740.1 | Symbols: TOC75-III, MAR1 | translocon at the outer...   542   e-154
AT1G35860.1 | Symbols: TOC75-I | translocon outer membrane compl...   149   4e-36

>AT3G46740.1 | Symbols: TOC75-III, MAR1 | translocon at the outer
           envelope membrane of chloroplasts 75-III |
           chr3:17216104-17219296 REVERSE LENGTH=818
          Length = 818

 Score =  542 bits (1397), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 250/320 (78%), Positives = 284/320 (88%)

Query: 93  WSRLLTPAAANADEPQSQEWDSHGLPANITVQLNKLSGFKKYMISEILFFDRNRRAKVSA 152
           W +L +P+ A ADE QS +WDSHGLPANI VQLNKLSGFKKY +S+I+FFDR R+  +  
Sbjct: 129 WGKLFSPSPAVADEEQSPDWDSHGLPANIVVQLNKLSGFKKYKVSDIMFFDRRRQTTIGT 188

Query: 153 DDSFSEMVSLRPGGVYTKAQLQKELESLATCGMFEKVDLQGKTNADGTLSLTVAFSESTW 212
           +DSF EMVS+RPGGVYTKAQLQKELE+LATCGMFEKVDL+GKT  DGTL +T++F+ESTW
Sbjct: 189 EDSFFEMVSIRPGGVYTKAQLQKELETLATCGMFEKVDLEGKTKPDGTLGVTISFAESTW 248

Query: 213 ESADRFRCINVGLMPQTKPVEMDPDMTDKERMEYYLSQERDYERRIDRARPCLLPGSVHQ 272
           +SADRFRCINVGLM Q+KP+EMD DMTDKE++EYY S E+DY+RRIDRARPCLLP  V+ 
Sbjct: 249 QSADRFRCINVGLMVQSKPIEMDSDMTDKEKLEYYRSLEKDYKRRIDRARPCLLPAPVYG 308

Query: 273 EIMQMLRRQGTVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTSEVVCEVVEGDITQ 332
           E+MQMLR QG VSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNT EVVCEVVEGDITQ
Sbjct: 309 EVMQMLRDQGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVCEVVEGDITQ 368

Query: 333 LSIQYQDKLGNIVEGNTQVPVIQRELPRQLRPGYTFNIEAGKQALRNINSLALFSNIEVN 392
           L IQ+QDKLGN+VEGNTQVPV++RELP+QLR GY FNIEAGK+AL NINSL LFSNIEVN
Sbjct: 369 LVIQFQDKLGNVVEGNTQVPVVRRELPKQLRQGYVFNIEAGKKALSNINSLGLFSNIEVN 428

Query: 393 PRPDENNEGGIIVGRRLKSV 412
           PRPDE NEGGIIV  +LK +
Sbjct: 429 PRPDEKNEGGIIVEIKLKEL 448


>AT1G35860.1 | Symbols: TOC75-I | translocon outer membrane complex
           75-I | chr1:13332047-13334050 REVERSE LENGTH=399
          Length = 399

 Score =  149 bits (376), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 26/167 (15%)

Query: 244 MEYYLSQERDYERRIDRARPCLLPGSVHQEIMQMLRRQGTVSARLLQRIRDRVQKWYHDE 303
           +EY  SQE++Y++RI++ARP    G+ +       +R  ++SARLL ++++RV KWY D+
Sbjct: 2   IEYLGSQEKEYKQRIEKARPSR--GNAYA------KRSRSLSARLLHKVKERVLKWYPDQ 53

Query: 304 GYACAQVVNFGNLNTSEVVCEVVEGDITQLSIQYQDKLGNIVEGNTQVPVIQRELPRQLR 363
           GY+ A VV+FGNLN+ E++ EV+EGDITQL IQ+QDKLGN+ E                 
Sbjct: 54  GYSFANVVSFGNLNSKELIFEVMEGDITQLVIQFQDKLGNVAE----------------- 96

Query: 364 PGYTFNIEAGKQALRNINSLALFSNIEVNPRPDENNEGGIIVGRRLK 410
            G+  NI+   +A+RNI+SL LFSNIE+ P P+E  EGG+IV  +L+
Sbjct: 97  -GHVLNIKVVHEAVRNIHSLGLFSNIEIMPIPNEKREGGVIVEVKLQ 142