Miyakogusa Predicted Gene

Lj3g3v1666150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1666150.1 tr|B9GJA2|B9GJA2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_549147 PE=4
SV=1,72.83,7e-19,seg,NULL; DVL,DVL,CUFF.42963.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59510.1 | Symbols: RTFL5, DVL18 | ROTUNDIFOLIA like 5 | chr5...    61   1e-10
AT2G29125.1 | Symbols: RTFL2, DVL13 | ROTUNDIFOLIA like 2 | chr2...    59   6e-10
AT1G07490.1 | Symbols: RTFL3, DVL9 | ROTUNDIFOLIA like 3 | chr1:...    56   5e-09
AT2G36985.1 | Symbols: ROT4, DVL16 | DVL family protein | chr2:1...    54   3e-08
AT3G46613.1 | Symbols: RTFL4, DVL15 | ROTUNDIFOLIA like 4 | chr3...    53   5e-08
AT3G55515.1 | Symbols: DVL8, RTFL7 | ROTUNDIFOLIA like 7 | chr3:...    52   5e-08
AT2G39705.1 | Symbols: RTFL8, DVL11 | ROTUNDIFOLIA like 8 | chr2...    52   1e-07
AT4G13395.1 | Symbols: DVL10, RTFL12 | ROTUNDIFOLIA like 12 | ch...    48   1e-06
AT3G14362.1 | Symbols: DVL19, RTFL10 | ROTUNDIFOLIA like 10 | ch...    47   2e-06
AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:200525...    46   5e-06

>AT5G59510.1 | Symbols: RTFL5, DVL18 | ROTUNDIFOLIA like 5 |
           chr5:23990089-23990523 FORWARD LENGTH=144
          Length = 144

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query: 52  QKNPSIGRKCTNLAKEQKARFYIMRRCVAMLVCWH 86
           QK  S+ RKC N+AKE K+RFYIM+RCV MLVCWH
Sbjct: 104 QKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWH 138


>AT2G29125.1 | Symbols: RTFL2, DVL13 | ROTUNDIFOLIA like 2 |
           chr2:12523472-12523819 FORWARD LENGTH=115
          Length = 115

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%), Gaps = 2/35 (5%)

Query: 57  IGRKCTNLAKEQKARFYIMRRCVAMLVCW--HGDS 89
           I +K ++LAKEQKARFYIMRRCVAMLVCW  HGDS
Sbjct: 81  ITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115


>AT1G07490.1 | Symbols: RTFL3, DVL9 | ROTUNDIFOLIA like 3 |
           chr1:2301526-2301849 REVERSE LENGTH=107
          Length = 107

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 27/30 (90%)

Query: 57  IGRKCTNLAKEQKARFYIMRRCVAMLVCWH 86
           I +K ++LAKEQK RFYIMRRCVAMLVCWH
Sbjct: 74  ITQKYSSLAKEQKGRFYIMRRCVAMLVCWH 103


>AT2G36985.1 | Symbols: ROT4, DVL16 | DVL family protein |
          chr2:15534943-15535104 REVERSE LENGTH=53
          Length = 53

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 29/31 (93%)

Query: 56 SIGRKCTNLAKEQKARFYIMRRCVAMLVCWH 86
          + G+KC+++ K+Q+A+FYI+RRC+AMLVCWH
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44


>AT3G46613.1 | Symbols: RTFL4, DVL15 | ROTUNDIFOLIA like 4 |
           chr3:17165791-17166225 FORWARD LENGTH=144
          Length = 144

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 53  KNPSIGRKCTNLAKEQKARFYIMRRCVAMLVCWHGDS 89
           K  S+  KC  +AKE K+RFYI++RCV MLVCWH  S
Sbjct: 108 KGASVTGKCFKVAKEHKSRFYIIKRCVLMLVCWHKHS 144


>AT3G55515.1 | Symbols: DVL8, RTFL7 | ROTUNDIFOLIA like 7 |
          chr3:20590923-20591162 FORWARD LENGTH=79
          Length = 79

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 59 RKCTNLAKEQKARFYIMRRCVAMLVCW 85
          RKC  L KEQ+ARFYIMRRCV ML+CW
Sbjct: 42 RKCGRLVKEQRARFYIMRRCVVMLICW 68


>AT2G39705.1 | Symbols: RTFL8, DVL11 | ROTUNDIFOLIA like 8 |
          chr2:16557038-16557301 FORWARD LENGTH=87
          Length = 87

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 52 QKNPSIGRKCTNLAKEQKARFYIMRRCVAMLVCW 85
          Q   +  RKC  L KEQ+ARFYIMRRCV ML+CW
Sbjct: 47 QGRCAFTRKCARLVKEQRARFYIMRRCVIMLICW 80


>AT4G13395.1 | Symbols: DVL10, RTFL12 | ROTUNDIFOLIA like 12 |
          chr4:7785883-7786050 REVERSE LENGTH=55
          Length = 55

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 57 IGRKCTNLAKEQKARFYIMRRCVAMLVCWHGDS 89
           G +C  +AK+Q+ R YI+RRCV+ML+CWH  S
Sbjct: 20 FGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHS 52


>AT3G14362.1 | Symbols: DVL19, RTFL10 | ROTUNDIFOLIA like 10 |
          chr3:4794181-4794327 REVERSE LENGTH=48
          Length = 48

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 52 QKNPSIGRKCTNLAKEQKARFYIMRRCVAMLVCW--HGD 88
           K  +   KC +L KEQ+AR YI+RRC  ML CW  HGD
Sbjct: 9  NKGHAFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGD 47


>AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 |
          chr1:20052530-20053032 FORWARD LENGTH=109
          Length = 109

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 53 KNPSIGRKCTNLAKEQKARFYIMRRCVAMLVCWH--GD 88
          K  +   KC +L KEQ+AR YI+RRC  ML CW+  GD
Sbjct: 10 KGHAFTSKCASLVKEQRARLYILRRCATMLCCWYIQGD 47