Miyakogusa Predicted Gene

Lj3g3v1662440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1662440.1 tr|B9MW33|B9MW33_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_592186 PE=4
SV=1,39.5,0.00000000000003,seg,NULL,CUFF.42938.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31130.1 | Symbols:  | unknown protein; Has 116 Blast hits to...    92   5e-19

>AT2G31130.1 | Symbols:  | unknown protein; Has 116 Blast hits to
          113 proteins in 44 species: Archae - 0; Bacteria - 3;
          Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0;
          Other Eukaryotes - 50 (source: NCBI BLink). |
          chr2:13263829-13265534 REVERSE LENGTH=419
          Length = 419

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 53/71 (74%), Gaps = 6/71 (8%)

Query: 4  MDVKGITWVGNMYQQFENMCLEAEDVMYEDTVKYFENQMRVVGASVKKLYSDIVEDLLPP 63
          MD KGI WVGN+YQ+FE MCLE E+++ +DT KY ENQ++ VG SVKK  SD+V DLLP 
Sbjct: 1  MDFKGIKWVGNVYQKFEAMCLEVEEIIVQDTAKYVENQVQTVGNSVKKFCSDVVHDLLP- 59

Query: 64 LSCGLDENVDS 74
               DE+VDS
Sbjct: 60 -----DESVDS 65