Miyakogusa Predicted Gene

Lj3g3v1605080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1605080.1 Non Chatacterized Hit- tr|E9B1F9|E9B1F9_LEIMU
Putative FG-GAP repeat protein (Putative intergrin
alp,31.28,4e-19,seg,NULL,CUFF.42866.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09090.1 | Symbols: DEX1 | defective in exine formation prote...   330   4e-91
AT3G09090.3 | Symbols: DEX1 | defective in exine formation prote...   295   2e-80
AT3G09090.2 | Symbols: DEX1 | defective in exine formation prote...   182   2e-46

>AT3G09090.1 | Symbols: DEX1 | defective in exine formation protein
           (DEX1) | chr3:2782912-2787552 REVERSE LENGTH=896
          Length = 896

 Score =  330 bits (846), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 151/200 (75%), Positives = 171/200 (85%)

Query: 1   MVMADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKTWKMPTQGRNNVANRYNREGIYI 60
           MV+ADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLK W+   QGRNN ANRY+REG+++
Sbjct: 694 MVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRSSDQGRNNKANRYDREGVFV 753

Query: 61  THPSRAFRDEEGKSFWVEIEIVDNYRYPSGHQGPYHVTITLLVPGNYQGERTIKQNQTYY 120
           TH +R FRDEEGK+FW EIEIVD YRYPSG Q PY+VT TLLVPGNYQGER I Q+Q Y 
Sbjct: 754 THSTRGFRDEEGKNFWAEIEIVDKYRYPSGSQAPYNVTTTLLVPGNYQGERRITQSQIYD 813

Query: 121 QPGKHRIKLPTVGVRTSGTVLVEMVDKNGLYFYDDFSLTFHMHYYKXXXXXXXXXXXGMF 180
           +PGK+RIKLPTVGVRT+GTV+VEM DKNGL+F D+FSLTFHM+YYK           GMF
Sbjct: 814 RPGKYRIKLPTVGVRTTGTVMVEMADKNGLHFSDEFSLTFHMYYYKLLKWLLVLPMLGMF 873

Query: 181 GMLVILRPQESMPLPSFSRN 200
           G+LVILRPQE++PLPSFSRN
Sbjct: 874 GLLVILRPQEAVPLPSFSRN 893


>AT3G09090.3 | Symbols: DEX1 | defective in exine formation protein
           (DEX1) | chr3:2782833-2787552 REVERSE LENGTH=891
          Length = 891

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 152/181 (83%)

Query: 1   MVMADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKTWKMPTQGRNNVANRYNREGIYI 60
           MV+ADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLK W+   QGRNN ANRY+REG+++
Sbjct: 694 MVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRSSDQGRNNKANRYDREGVFV 753

Query: 61  THPSRAFRDEEGKSFWVEIEIVDNYRYPSGHQGPYHVTITLLVPGNYQGERTIKQNQTYY 120
           TH +R FRDEEGK+FW EIEIVD YRYPSG Q PY+VT TLLVPGNYQGER I Q+Q Y 
Sbjct: 754 THSTRGFRDEEGKNFWAEIEIVDKYRYPSGSQAPYNVTTTLLVPGNYQGERRITQSQIYD 813

Query: 121 QPGKHRIKLPTVGVRTSGTVLVEMVDKNGLYFYDDFSLTFHMHYYKXXXXXXXXXXXGMF 180
           +PGK+RIKLPTVGVRT+GTV+VEM DKNGL+F D+FSLTFHM+YYK           GMF
Sbjct: 814 RPGKYRIKLPTVGVRTTGTVMVEMADKNGLHFSDEFSLTFHMYYYKLLKWLLVLPMLGMF 873

Query: 181 G 181
           G
Sbjct: 874 G 874


>AT3G09090.2 | Symbols: DEX1 | defective in exine formation protein
           (DEX1) | chr3:2783165-2787552 REVERSE LENGTH=817
          Length = 817

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 88/99 (88%)

Query: 1   MVMADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKTWKMPTQGRNNVANRYNREGIYI 60
           MV+ADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLK W+   QGRNN ANRY+REG+++
Sbjct: 694 MVLADNVDGGDDLDLIVSTMNGNVFCFSTPSPHHPLKAWRSSDQGRNNKANRYDREGVFV 753

Query: 61  THPSRAFRDEEGKSFWVEIEIVDNYRYPSGHQGPYHVTI 99
           TH +R FRDEEGK+FW EIEIVD YRYPSG Q PY+VT+
Sbjct: 754 THSTRGFRDEEGKNFWAEIEIVDKYRYPSGSQAPYNVTL 792