Miyakogusa Predicted Gene

Lj3g3v1603950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1603950.1 Non Chatacterized Hit- tr|I3SDA2|I3SDA2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.42,0,SUBFAMILY
NOT NAMED,NULL; MACHADO-JOSEPH DISEASE PROTEIN 1 (ATAXIN-3),NULL;
JOSEPHIN,Machado-Joseph ,CUFF.42849.1
         (345 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54130.1 | Symbols:  | Josephin family protein | chr3:2004289...   377   e-105
AT2G29640.1 | Symbols: JOSL | JOSEPHIN-like protein | chr2:12671...    55   6e-08

>AT3G54130.1 | Symbols:  | Josephin family protein |
           chr3:20042895-20044429 REVERSE LENGTH=280
          Length = 280

 Score =  377 bits (967), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/252 (76%), Positives = 214/252 (84%), Gaps = 8/252 (3%)

Query: 3   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMM----L 58
           ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD KERQ+M+    +
Sbjct: 1   MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAV 60

Query: 59  PSLASGDFLSHDSHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFI 118
              A GDFL+ +SHNVSL GDFSIQVLQKALEVWDLQVIPL+ P AEPAQIDPELE+AFI
Sbjct: 61  GGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFI 120

Query: 119 CHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGFGWSIFLVRGNFPKEF 178
           CHL DHWFCIRKVNGEWYNFDSL AAPQHLSKFYL+A+LDSLKG GWSIF+V+GNFP+E 
Sbjct: 121 CHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQEC 180

Query: 179 PI-SSSEASNGFGQWLSPEDAERIIK---SCSSVQAPQRVNNERQQRQDQFLSREEADMF 234
           P+ SSSEASN FGQWLSPEDAERI K   S SS +  +  +N  QQR++Q LSREE   F
Sbjct: 181 PMSSSSEASNSFGQWLSPEDAERIRKNTSSGSSARNKRSNDNVNQQRRNQALSREEVQAF 240

Query: 235 SEMEDEDLKAAI 246
           SEMED+DLKAAI
Sbjct: 241 SEMEDDDLKAAI 252


>AT2G29640.1 | Symbols: JOSL | JOSEPHIN-like protein |
           chr2:12671206-12673300 FORWARD LENGTH=360
          Length = 360

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 37/158 (23%)

Query: 12  LYHEVQESKLCAVHCVNTVLQGP-FFSEFDLAALASDLDCKERQMMMLPSLASGDFLSHD 70
           +YHE Q  + C +HC+N + Q    F++  L ++A  L+  +        L+   F+   
Sbjct: 8   IYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLS---FVLKP 64

Query: 71  SHNVSLDGDFSIQVLQKALE------VW----------------DLQVIPLDSPVAEPAQ 108
            HN ++ G++ + V+  ALE      VW                 L  I L+ PV     
Sbjct: 65  HHN-TITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADTLMGIVLNVPVKRYGG 123

Query: 109 IDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPQ 146
           +              HW  +RK+NG WYN DS    PQ
Sbjct: 124 L----------WRSRHWVVVRKINGVWYNLDSDLVVPQ 151