Miyakogusa Predicted Gene

Lj3g3v1556590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1556590.1 tr|B9I081|B9I081_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_569063 PE=4
SV=1,55.84,0.00000000000001,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; PsbQ,Photosystem II PsbQ, oxygen evolving
comp,CUFF.42793.1
         (245 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168478-16...   243   1e-64
AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...    81   6e-16
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu...    79   2e-15
AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II sub...    69   4e-12
AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4...    60   2e-09
AT1G14150.2 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4...    57   1e-08

>AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 |
           chr3:168478-169407 FORWARD LENGTH=220
          Length = 220

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 165/222 (74%), Gaps = 6/222 (2%)

Query: 20  MAPLTNLHGVSKNLTPITCLPNVHRTLRRGHVVGFLGRKSQEFSEC-SVQSTRRAAAISF 78
           MA   +L+ ++  L  +  LP   +T   G   GF  R+++EF E  SVQ TRR      
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKT---GKSSGFACRRTEEFQEPDSVQITRRMTLGFA 57

Query: 79  ASLLLTGQF-KDNVSLA-DNGFWIDGPLPEPIVINKIANEKTGTRSFLKKRLYMANIGVK 136
            S+ LTG   ++NVSLA DNGFWIDGPLP P + N I NEKTGTR+F+KK +Y+A+IG K
Sbjct: 58  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 117

Query: 137 GSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEKQQLTD 196
           G +YR+KK AFDLLAM DL+  DTLNYV++YLRLKSTF+++DFD +ISA   ++KQ LTD
Sbjct: 118 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 177

Query: 197 MANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
           +AN+LFDNFEKLE+A++ KNL+ET+SCY++++ LL+EVM RM
Sbjct: 178 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219


>AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=223
          Length = 223

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 20  MAPLTNLHGVSKNLTPITCLPNVHRTLRRGHVVGFLGR-----KSQEFSECSVQSTRRAA 74
           MA +  LHG S  +   +   N    L     V    R     ++Q+  E S    RR+ 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETS----RRSV 56

Query: 75  AISFASLLLTGQFKDNVSLADNGFWIDGPLPEPIVINKIANEKTGTRSF---LKKRLYMA 131
               A+ L  G F   V LAD      GP P P       +     R F   LK R Y+ 
Sbjct: 57  IGLVAAGLAGGSFVQAV-LADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQ 115

Query: 132 NIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEK 191
            +    +  R K+ A D++ +  L+      YV+  LR K++++ +D + +IS+ P DEK
Sbjct: 116 PLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEK 175

Query: 192 QQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
           + L D+  KLFD  + L+ A++KK+ S+ +  Y E+   L EV+ ++
Sbjct: 176 KSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222


>AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
           QA | chr4:11334446-11335587 FORWARD LENGTH=224
          Length = 224

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 20  MAPLTNLHGVSKNLTPITCLPNVHRTLRRGHVVGFLGR-----KSQEFSECSVQSTRRAA 74
           MA +  LHG S  +   +   N    L     V    R     ++Q+  E S    RR+ 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETS----RRSV 56

Query: 75  AISFASLLLTGQFKDNVSLADNGFWIDGPLPEPIV-INKIANEKTGTRSF---LKKRLYM 130
               A+ L  G F   V LAD      GP P P   +    +     R F   LK R Y+
Sbjct: 57  IGLVAAGLAGGSFVQAV-LADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYL 115

Query: 131 ANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKSTFMYHDFDKVISATPVDE 190
             +    +  R K+ A D++ +  L+      YV+  LR K++++ +D + +IS+ P DE
Sbjct: 116 QPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDE 175

Query: 191 KQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQESEILLKEVMDRM 238
           K+ L D+  KLFD  + L+ A++KK+ S+ +  Y E+   L EV+ ++
Sbjct: 176 KKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223


>AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
           subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230
          Length = 230

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 6/201 (2%)

Query: 41  NVHRTLRRGHVVGFLGRKSQEFSECSVQSTRRAAAISFASLLLTGQFKDNVSLADNGFWI 100
           N+ R        G + R  Q  S    +S+RR+     A+ L  G F   V        +
Sbjct: 32  NISRVSVGSQRTGLVIRAQQNVSVP--ESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKV 89

Query: 101 DGPLPEPIVINKIANEKTGTRSF---LKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVK 157
            GP P P       +     R F   LK R Y+  +    +  R K  A +++ +   + 
Sbjct: 90  GGP-PLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFID 148

Query: 158 EDTLNYVRRYLRLKSTFMYHDFDKVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNL 217
           +    YV+  LRL+++++ +D + VISA P +EKQ L D+  KLF   + L+ A+R K+ 
Sbjct: 149 KKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSS 208

Query: 218 SETKSCYQESEILLKEVMDRM 238
            + +  Y E+   L  V+ ++
Sbjct: 209 PDAEKYYSETVSSLNNVLAKL 229


>AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
           chr1:4839885-4840632 FORWARD LENGTH=190
          Length = 190

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%)

Query: 113 IANEKTGTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKS 172
           +A EK GTRSF+K++ +M  +  + +  RIK+ A  L  M +++   +  YV  Y+RLK 
Sbjct: 64  LAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQ 123

Query: 173 TFMYHDFDKVISATPVDEKQQLTDMANKLFDNFEKLEEASRKKNLSETKSCYQES 227
            ++  D    ++  P   +      AN+L +N  +L+   R   + E+   Y+++
Sbjct: 124 AYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKT 178


>AT1G14150.2 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
           chr1:4839885-4840373 FORWARD LENGTH=162
          Length = 162

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 113 IANEKTGTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDTLNYVRRYLRLKS 172
           +A EK GTRSF+K++ +M  +  + +  RIK+ A  L  M +++   +  YV  Y+RLK 
Sbjct: 64  LAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQ 123

Query: 173 TFMYHDFDKVISATPVDEKQQLTDMANKLFDNFEKL 208
            ++  D    ++  P   +      AN+L +N  ++
Sbjct: 124 AYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159