Miyakogusa Predicted Gene

Lj3g3v1545570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1545570.1 tr|B7FHX6|B7FHX6_MEDTR Transcription factor ILR3
OS=Medicago truncatula GN=MTR_2g082640 PE=2
SV=1,76.79,0,coiled-coil,NULL; no description,Helix-loop-helix domain;
helix loop helix domain,Helix-loop-helix d,CUFF.42791.1
         (236 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (b...   312   1e-85
AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   268   2e-72
AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   245   2e-65
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DN...   186   8e-48
AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   180   8e-46
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   180   9e-46
AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    93   1e-19
AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    93   1e-19
AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    84   6e-17
AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    84   1e-16
AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    61   5e-10
AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    61   5e-10
AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    61   5e-10

>AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr5:22217270-22218993 FORWARD LENGTH=234
          Length = 234

 Score =  312 bits (800), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 162/240 (67%), Positives = 185/240 (77%), Gaps = 10/240 (4%)

Query: 1   MVSAENTNWLFDYGLIDDDIPGSDGSFTLSASAFNWP---PPPQPSNVGVEIDGSLGDFD 57
           MVS EN NW+ D  LID D     GSFT+    F+WP   P    SN    +DGS G+ +
Sbjct: 1   MVSPENANWICD--LIDADY----GSFTIQGPGFSWPVQQPIGVSSNSSAGVDGSAGNSE 54

Query: 58  GLKDPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 117
             K+PG KKRGR +S + +SSKACREK RRD+LNDKF+ELG+ILEPG PPKTDKAAIL+D
Sbjct: 55  ASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVD 114

Query: 118 AVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQ 177
           AVR+VTQLRGEAQ LKDSN+SLQ+KIKELK EKNELRDEKQRLK EKEKLEQQ+K MN  
Sbjct: 115 AVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAP 174

Query: 178 QPGFLPAPPTIPAAF-SALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
           QP F PAPP +P AF SA GQAPG+K VP   +PGVAMWQF+P A+VDTSQDH LRPP A
Sbjct: 175 QPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234


>AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=226
          Length = 226

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/239 (59%), Positives = 170/239 (71%), Gaps = 16/239 (6%)

Query: 1   MVSAENTNWLFDYGLIDDDIPGSDGSFTLSASAFNWPPPPQPSNVGVEIDGSLGDFDGLK 60
           MVS ENTNWL DY LI+       G+F+     F W      + V VE+DG L D D +K
Sbjct: 1   MVSPENTNWLSDYPLIE-------GAFSDQNPTFPWQIDGS-ATVSVEVDGFLCDADVIK 52

Query: 61  DPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVR 120
           +P  +KR +T+SC  S+SKACREK RRD+LNDKF EL S+LEPGR PKTDK AI+ DA+R
Sbjct: 53  EPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIR 112

Query: 121 VVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQ--- 177
           +V Q R EAQ LKD N+SLQEKIKELK EKNELRDEKQ+LK EKE+++QQ+K +  Q   
Sbjct: 113 MVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQP 172

Query: 178 QPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
           QP FLP P T+  A     QAPGSK VP+  +PG AMWQF+P AAVDTSQDH LRPP A
Sbjct: 173 QPCFLPNPQTLSQA-----QAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226


>AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=292
          Length = 292

 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 148/194 (76%), Gaps = 8/194 (4%)

Query: 46  GVEIDGSLGDFDGLKDPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGR 105
            VE+DG L D D +K+P  +KR +T+SC  S+SKACREK RRD+LNDKF EL S+LEPGR
Sbjct: 104 SVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGR 163

Query: 106 PPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKE 165
            PKTDK AI+ DA+R+V Q R EAQ LKD N+SLQEKIKELK EKNELRDEKQ+LK EKE
Sbjct: 164 TPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKE 223

Query: 166 KLEQQVKLMNVQ---QPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAA 222
           +++QQ+K +  Q   QP FLP P T+  A     QAPGSK VP+  +PG AMWQF+P AA
Sbjct: 224 RIDQQLKAIKTQPQPQPCFLPNPQTLSQA-----QAPGSKLVPFTTYPGFAMWQFMPPAA 278

Query: 223 VDTSQDHQLRPPAA 236
           VDTSQDH LRPP A
Sbjct: 279 VDTSQDHVLRPPVA 292


>AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8283255-8284915
           REVERSE LENGTH=320
          Length = 320

 Score =  186 bits (473), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 125/172 (72%), Gaps = 6/172 (3%)

Query: 66  KRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQL 125
           KR RT SC+   +KACREKLRR+KLNDKF++L S+LEPGR PKTDK+AIL DA+RVV QL
Sbjct: 154 KRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQL 213

Query: 126 RGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQQPGFLPAP 185
           RGEA  L+++N  L E+IK LKA+KNELR+EK  LKAEKEK+EQQ+K M V  PGF+P+ 
Sbjct: 214 RGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPS- 272

Query: 186 PTIPAAFSALGQAPGSKFVPYGYH-PGVAMWQFLPSAAVDTSQDHQLRPPAA 236
              PAAF +   A      PYGY+ P + MW  LP A  DTS+D +  PP A
Sbjct: 273 -QHPAAFHSHKMAVA---YPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320


>AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300418-8301503
           FORWARD LENGTH=277
          Length = 277

 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 125/179 (69%), Gaps = 10/179 (5%)

Query: 59  LKDPGVKKRGRTDSCAPSS-SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 117
           L D   +KR RT SC+    +KACRE+LRR+KLN++F++L S+LEPGR PKTDK AIL D
Sbjct: 108 LDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDD 167

Query: 118 AVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQ 177
           A+R++ QLR EA  L+++N  L E+IK LKAEKNELR+EK  LKA+KEK EQQ+K M   
Sbjct: 168 AIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAP 227

Query: 178 QPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
             GF+P    IPAAF+    A    +  YGY P   MW ++P +  DTS+D +LRPPAA
Sbjct: 228 SSGFIPH---IPAAFNHNKMAV---YPSYGYMP---MWHYMPQSVRDTSRDQELRPPAA 277


>AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300077-8301503
           FORWARD LENGTH=283
          Length = 283

 Score =  180 bits (456), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 125/179 (69%), Gaps = 10/179 (5%)

Query: 59  LKDPGVKKRGRTDSCAPSS-SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 117
           L D   +KR RT SC+    +KACRE+LRR+KLN++F++L S+LEPGR PKTDK AIL D
Sbjct: 114 LDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDD 173

Query: 118 AVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQ 177
           A+R++ QLR EA  L+++N  L E+IK LKAEKNELR+EK  LKA+KEK EQQ+K M   
Sbjct: 174 AIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAP 233

Query: 178 QPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA 236
             GF+P    IPAAF+    A    +  YGY P   MW ++P +  DTS+D +LRPPAA
Sbjct: 234 SSGFIPH---IPAAFNHNKMAV---YPSYGYMP---MWHYMPQSVRDTSRDQELRPPAA 283


>AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6903842-6905863
           FORWARD LENGTH=337
          Length = 337

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 37/171 (21%)

Query: 71  DSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQ 130
           D  A  S KA REKLRR+KLN+ FVELG++L+P RP K DKA IL D V+++ +L  E  
Sbjct: 55  DVSARKSQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVN 113

Query: 131 NLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKL----EQQVKLMN----------- 175
            LK   T+L ++ +EL  EKN+LR+EK  LK++ E L    +Q+++ M+           
Sbjct: 114 KLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVM 173

Query: 176 -------------VQQPGFLPAPPTIPAAFSALGQ-------APGSKFVPY 206
                           PG +P  P++P +++  G        AP   ++PY
Sbjct: 174 MAPPPSFPYPMPIAMPPGSIPMHPSMP-SYTYFGNQNPSMIPAPCPTYMPY 223


>AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6904579-6905863
           FORWARD LENGTH=284
          Length = 284

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 37/171 (21%)

Query: 71  DSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQ 130
           D  A  S KA REKLRR+KLN+ FVELG++L+P RP K DKA IL D V+++ +L  E  
Sbjct: 2   DVSARKSQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVN 60

Query: 131 NLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKL----EQQVKLMN----------- 175
            LK   T+L ++ +EL  EKN+LR+EK  LK++ E L    +Q+++ M+           
Sbjct: 61  KLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVM 120

Query: 176 -------------VQQPGFLPAPPTIPAAFSALGQ-------APGSKFVPY 206
                           PG +P  P++P +++  G        AP   ++PY
Sbjct: 121 MAPPPSFPYPMPIAMPPGSIPMHPSMP-SYTYFGNQNPSMIPAPCPTYMPY 170


>AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055521-17056567
           FORWARD LENGTH=268
          Length = 268

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 11/138 (7%)

Query: 74  APSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLK 133
           A  S KA REKLRRDKL ++F+ELG+ L+P RP K+DKA++L D ++++  +  +   LK
Sbjct: 26  AVCSQKAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLK 84

Query: 134 DSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKL----EQQVKLMNVQQPGFLPAPPTIP 189
               +L ++ +EL  EK+ELR+EK  LK++ E L    + ++K M    P +    P   
Sbjct: 85  AEYETLSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWVPHYSYHIP--- 141

Query: 190 AAFSALGQAPGSKFVPYG 207
             F A+ Q   S F+PY 
Sbjct: 142 --FVAITQGQSS-FIPYS 156


>AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055397-17056567
           FORWARD LENGTH=286
          Length = 286

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 11/138 (7%)

Query: 74  APSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLK 133
           A  S KA REKLRRDKL ++F+ELG+ L+P RP K+DKA++L D ++++  +  +   LK
Sbjct: 44  AVCSQKAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLK 102

Query: 134 DSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKL----EQQVKLMNVQQPGFLPAPPTIP 189
               +L ++ +EL  EK+ELR+EK  LK++ E L    + ++K M    P +    P   
Sbjct: 103 AEYETLSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWVPHYSYHIP--- 159

Query: 190 AAFSALGQAPGSKFVPYG 207
             F A+ Q   S F+PY 
Sbjct: 160 --FVAITQGQSS-FIPYS 174


>AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 78  SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNT 137
           +KA RE+L+R+ LN+ F+EL   LE  +   + KA+IL +A R +  + G+ ++L+  + 
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 138 SLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVK 172
           SL  +   +  EKNEL++E   L+ E  KL+ +++
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIE 124


>AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 78  SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNT 137
           +KA RE+L+R+ LN+ F+EL   LE  +   + KA+IL +A R +  + G+ ++L+  + 
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 138 SLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVK 172
           SL  +   +  EKNEL++E   L+ E  KL+ +++
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIE 124


>AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 78  SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNT 137
           +KA RE+L+R+ LN+ F+EL   LE  +   + KA+IL +A R +  + G+ ++L+  + 
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 138 SLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVK 172
           SL  +   +  EKNEL++E   L+ E  KL+ +++
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIE 124