Miyakogusa Predicted Gene

Lj3g3v1544540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1544540.1 tr|G7IHE9|G7IHE9_MEDTR Autophagy-related protein
OS=Medicago truncatula GN=MTR_2g082770 PE=4 SV=1,78.42,0,WD40
repeat-like,WD40-repeat-containing domain; WD40 repeats,WD40 repeat;
BCAS3,Breast carcinoma amp,CUFF.42789.1
         (725 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54730.1 | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast...   396   e-110
AT1G54710.1 | Symbols: ATATG18H, ATG18H | homolog of yeast autop...   327   2e-89
AT1G03380.1 | Symbols: ATATG18G, ATG18G | homolog of yeast autop...   324   1e-88
AT5G05150.1 | Symbols: ATATG18E, ATG18E, G18E | autophagy-relate...    55   1e-07
AT2G40810.2 | Symbols: ATATG18C, ATG18C | homolog of yeast autop...    54   3e-07
AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast autop...    54   3e-07
AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast autop...    52   1e-06

>AT5G54730.1 | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast
           autophagy 18 (ATG18) F | chr5:22233977-22236804 REVERSE
           LENGTH=763
          Length = 763

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 271/696 (38%), Positives = 363/696 (52%), Gaps = 111/696 (15%)

Query: 1   MQMVPNPIASKRSEDKFANSRPLLVVCADGFFAGGSNVKDGLTAPSNGSASNSHDQMSGN 60
           MQM+ NPI S   +D+F  SRPLL VC D      S+ K     P + + +         
Sbjct: 113 MQMLLNPINSGVLDDRFYKSRPLLAVCGDY-----SSKKISSDNPGSETVAT-------- 159

Query: 61  YLPTTVQFYSMKSHSYVNVMKFXXXXXXXXXXXXXXAVSQSTQIHCFNSITLEREYTLLT 120
             PT V  YS+KS SYV+ +KF              AV Q+ QI CF++ TLE +Y ++T
Sbjct: 160 --PTNVYVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVT 217

Query: 121 NXXXXXXXXXXXXXXXXXXXXXRWLAYSGCPVVVSASGHVSPQHLMPSASFPGFSSNGSL 180
           N                     RW+AYSG  +  S+S   + + +  S S P        
Sbjct: 218 NSIVCGSLGVGYGPLAVGP---RWIAYSGSRIATSSSAIFTSEIVSLSTSSPS------- 267

Query: 181 IAHYAKESSKHLATGIVTLGDMGYKKLSKYCSE--NNGSLQSVNSGSKGNGTINGHSADA 238
           +A +A++SSK LA+GI  LGD GY+ L+KYCSE   N  +     G KG G  N   ADA
Sbjct: 268 VAQFARDSSKQLASGIANLGDKGYRSLTKYCSEVLPNPYI----PGLKGIGVGNEKVADA 323

Query: 239 DNIGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGREN 298
           ++IGMVIVKDI  K+V+ QF+AHKSPISALCFD SG +LVTAS+QGHNINVF+IMP    
Sbjct: 324 ESIGMVIVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMP---T 380

Query: 299 SSTSDA--DPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYV 356
            STS A    ++ HL+RLQRGFTNAVIQDI FS DS  I++ SSRGTSHLF INP+    
Sbjct: 381 ISTSRAVKTTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINPE---- 436

Query: 357 NIQSYDDSFTTKNSGTGAATNQIVCRPHSSALQRPKQQSLFVTGPPITLSVVSRIRNG-T 415
                           G A                          P+ +S +SRIR+G +
Sbjct: 437 --------------KEGDA--------------------------PVPMSAISRIRSGNS 456

Query: 416 NGWRGT-VSGXXXXXTGRKSSLSGAIASSFRNC-KGSEGNYSK------SKYQLLVFSPS 467
           +GW GT              S+ G + S+F  C + S  NY        SK  LLVF+PS
Sbjct: 457 SGWIGTVSGAASAAAGMVAGSVPGTVTSTFCYCDEKSNNNYYGSVADMCSKTNLLVFAPS 516

Query: 468 GSMIQYALR---TLTGQDSTVASGLTPPYESMQQADTRLVVEAMHKWNICQSHSRRERED 524
           G M QYALR      G ++   +G     ES  + + +L V+ + +W++ Q+ SRRE  D
Sbjct: 517 GCMTQYALREHQVGVGHETAAMTGFDS--ESGLETEGKLAVDPIRRWSMIQNQSRRETHD 574

Query: 525 -NVDIYGENGISDSK-KIYPEEVKEDIMSPKMKNGAMKVNPCEDAHHLYISEAELQMHE- 581
            + DIYG     DSK K++PE V++  +    K          D  HLYI EAE Q    
Sbjct: 575 PHSDIYGGGTSVDSKSKVFPEVVRKQSVEEAWKVSKKGTTRVVDKRHLYIYEAEQQQTHL 634

Query: 582 -AQVPLWGKPEIYFQSMLKDSNIMDEEAASGG--EFEIERIPTCMIEARSKDLVPIFDYV 638
             Q+PLW + +  FQ ++ +     EE + GG  E EIE I T  IEAR++DLVP++ Y+
Sbjct: 635 PTQLPLWARRKFRFQELVLNRG---EEISGGGGREMEIEGIQTRTIEARTRDLVPVWGYL 691

Query: 639 QNPKSQQTRTHSL--------DSKISEQLLHHSETE 666
           Q+P+SQQ    S+        D K++    H +ET+
Sbjct: 692 QSPRSQQVINESIQSPSTTTQDDKVATLEGHGTETD 727


>AT1G54710.1 | Symbols: ATATG18H, ATG18H | homolog of yeast
           autophagy 18 (ATG18) H | chr1:20417019-20420733 REVERSE
           LENGTH=927
          Length = 927

 Score =  327 bits (837), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 226/660 (34%), Positives = 341/660 (51%), Gaps = 64/660 (9%)

Query: 1   MQMVPNPIASKRSEDKFANSRPLLVVCADGFFAGGSNVKDGLTAPSNGSASNSHDQMSGN 60
           +QM P P A     + F +S P+L+  AD     G      +    +GS  N ++     
Sbjct: 120 LQMQPLP-AKCDGVEGFRSSHPILLAVADEAKGSGP-----IVTSRDGSVRNGYEDPLA- 172

Query: 61  YLPTTVQFYSMKSHSYVNVMKFXXXXXXXXXXXXXXAVSQSTQIHCFNSITLEREYTLLT 120
             PT V+FYS++SH+YV+V++F              AV   +QI+CF+++TLE ++++L+
Sbjct: 173 LSPTVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLS 232

Query: 121 NXXXXXXXXXXXXXXXX---XXXXXRWLAYSGCPVVVSASGHVSPQHLMPSASFPGFS-S 176
                                    RWLAY+    + S+ G +SPQ++ P    P  S +
Sbjct: 233 YPVPQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPN 292

Query: 177 NGSLIAHYAKESSKHLATGIVTLGDMGYKKLSKYCSE--NNGSLQSVNSG-SKGNGTING 233
           NG+L+A YA ESSKHLA G++ LGD GYK +SKYC +  ++G   S++S   +  G +  
Sbjct: 293 NGNLVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGS 352

Query: 234 HSADADNIGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIM 293
           HSA++D +G VIVKD  ++ ++AQFRAH SPISALCFDPSGT+LVTAS+ G+NINVF+IM
Sbjct: 353 HSAESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIM 412

Query: 294 P----GRENSSTSDADPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAI 349
           P        + + D   S+V LY+L RG T+AVIQDI FS  S+WI I SS+ T H++ +
Sbjct: 413 PTPTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVL 472

Query: 350 NPQGGYVNIQSYDDSFTTKNSGTGAATNQIVCRPHSSALQRPKQQSLFVTGPP---ITLS 406
           +P GG   ++  +  F       G      +  P  S+   P   +   + PP   +TLS
Sbjct: 473 SPFGGENVLEIRNSQF------DGPTLAPTLSLPWWSS---PSFMTTHFSYPPPASVTLS 523

Query: 407 VVSRIRNGTNGWRGTVSGXXXXXTGRKSSLSGAIASSFRNCKGSEGNYSKSKYQ-LLVFS 465
           VVSRI+   N +    S       G+ +  SG +A+ F      E   S      LLV++
Sbjct: 524 VVSRIK--CNNFFHAAS----SVVGKPTFPSGCLAAVFHQSVPQESQSSSPALDYLLVYT 577

Query: 466 PSGSMIQYALRTLTGQDST-------VASGLTPPYESMQQADTRLVVEAMHKWNICQSHS 518
           PSG ++QY L    G D           SGLT       + + R+ VE +  W++C+   
Sbjct: 578 PSGHVVQYKLIPSLGGDQAESNTRNGATSGLT------SEEELRVKVEPVQCWDVCRRAD 631

Query: 519 RREREDNVDIYGENGISDSKKIYPEEVKEDIMSPKMKNGAMKVNPCEDAHHLYISEAELQ 578
             ERE+N+      G  +++        ED   P  K            HH+Y++ AE+ 
Sbjct: 632 WPEREENICGLTYGGRKNAELTVDTSDSEDQTKPLEK------------HHVYLANAEVL 679

Query: 579 MHEAQVPLWGKPEIYFQSML-KDSNIMDEEA-ASGGEFEIERIPTCMIEARSKDLVPIFD 636
           ++  + P+W   EI F  M   DS+  +  +   GGE EI ++    ++ R KDL+P++D
Sbjct: 680 INSGRKPIWQNSEISFYPMYPPDSDGKNLNSHQGGGETEIGKVSANEVDIRRKDLLPVYD 739


>AT1G03380.1 | Symbols: ATATG18G, ATG18G | homolog of yeast
           autophagy 18 (ATG18) G | chr1:836155-840362 FORWARD
           LENGTH=959
          Length = 959

 Score =  324 bits (831), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 245/707 (34%), Positives = 367/707 (51%), Gaps = 78/707 (11%)

Query: 1   MQMVPNPIASKRSEDKFANSRPLLVVCA----DGFFAGGSNVKDGLTAPSNGSASNSHDQ 56
           +QM P P  S   E  F NS PLL+V A    +G   G S  ++G  A    S S + D 
Sbjct: 111 LQMQPLPARSGDHEG-FWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDA 169

Query: 57  MSGNYLPTTVQFYSMKSHSYVNVMKFXXXXXXXXXXXXXXAVSQSTQIHCFNSITLEREY 116
           +  NY PTTV+FYS++SHSYV V++F              AV  + QI+C +++TLE ++
Sbjct: 170 I--NY-PTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKF 226

Query: 117 TLLTNXXXXXXXXXXXXXXXX---XXXXXRWLAYSGCPVVVSASGHVSPQHL--MPSASF 171
           ++LT                         RWLAY+    +   +G +SPQ     PS S 
Sbjct: 227 SVLTYPVPQPVRQGTTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSP 286

Query: 172 PGFSSNGSLIAHYAKESSKHLATGIVTLGDMGYKKLSKYCSE----NNGSLQSVNSGSKG 227
              S   S +A YA ESSK LA G++ LGDMGYK LSKYC +     + S  S N+  K 
Sbjct: 287 SSSSGGSSFMARYAMESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKV 346

Query: 228 NGTINGHSADADNIGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNI 287
            G ++G  +DA+N GMV VKD+V+  +V+QF+AH SPISALCFDPSGT+LVTASV G+NI
Sbjct: 347 GG-VSG--SDAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNI 403

Query: 288 NVFKIMPGRENSSTSDA----DPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGT 343
           NVF+IMP R +++  D     + S+VHL++L RG T+A++QDI FS  S+W+ I SS+GT
Sbjct: 404 NVFQIMPSRSHNAPGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGT 463

Query: 344 SHLFAINPQGGYVNIQSYDDSFTTKNSGTGAATNQIVCRPHSSA---LQRPKQQSLFVTG 400
            H+F +N  G     Q  +    T+              P SS      +    +     
Sbjct: 464 CHIFVLNSSGSDAAFQPCEGEEPTR-------------LPASSLPWWFTQSLSSNQQSLS 510

Query: 401 PP--ITLSVVSRIRNGTNGWRGTVSGXXXXXTGRKSSLSGAIASSFRNCKGSE---GNYS 455
           PP  + LSVVSRI+  + GW  TVS      TG+    SGA+A+ F      +    + +
Sbjct: 511 PPTAVALSVVSRIKYSSFGWLNTVSNATTAATGKVFVPSGAVAAVFHKSVTHDLQLNSRT 570

Query: 456 KSKYQLLVFSPSGSMIQYALRTLTGQDSTVASGLTPPYES---MQQADTRLVVEAMHKWN 512
            +   +LV++PSG ++Q+ L      +S   +GL     S   +Q+ D R+ VE +  W+
Sbjct: 571 NALEHILVYTPSGHVVQHELLPSVCTESP-ENGLRVQKTSHVQVQEDDLRVKVEPIQWWD 629

Query: 513 ICQSHSRREREDNVDIYGENGISDSKKIYPEEVKEDIMSPKMKNGAMKVNP--CEDAH-- 568
           +C+     E E+ +       I++ K+   E V   + S +    ++ +N    ED +  
Sbjct: 630 VCRRSDWLETEERL----PKSITE-KQYDLETVSNHLTSHEDACLSLDMNSHFSEDKYLK 684

Query: 569 ----------HLYISEAELQMHEAQVPLWGKPEIYFQSMLKDSNIMDEEAASGGEFEIER 618
                     H Y+S  E+++    +P+W   +I F  M  DS    + +++GGEFEIE+
Sbjct: 685 SCSEKPPERSHCYLSNFEVKVTSGMLPVWQNSKISFHVM--DSP--RDSSSTGGEFEIEK 740

Query: 619 IPTCMIEARSKDLVPIFDYVQNPKSQQTRTHSLDSKISEQLLHHSET 665
           +P   +E + K L+P+FD+  + K+      +L+ + S +  H S T
Sbjct: 741 VPAHELEIKQKKLLPVFDHFHSTKA------TLEDRFSMKCYHTSAT 781


>AT5G05150.1 | Symbols: ATATG18E, ATG18E, G18E | autophagy-related
           gene 18E | chr5:1524841-1526199 REVERSE LENGTH=374
          Length = 374

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 19/121 (15%)

Query: 242 GMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGRENSST 301
           G V V D+   NV+   +AH S I+ +     G++L TAS +G  I +F  + G      
Sbjct: 185 GQVQVHDL-RWNVIKFIKAHDSAIACMTLTLDGSLLATASTKGTLIRIFNAVDG------ 237

Query: 302 SDADPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSY 361
                    L   +RG   A I +++ S + KW+  SS +GT H+F + P     +I S+
Sbjct: 238 -------TLLQEFRRGVERAEIYNVAISSNLKWVAASSEKGTLHVFRLRP-----DILSF 285

Query: 362 D 362
           D
Sbjct: 286 D 286


>AT2G40810.2 | Symbols: ATATG18C, ATG18C | homolog of yeast
           autophagy 18C | chr2:17032686-17034338 FORWARD
           LENGTH=393
          Length = 393

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 25/137 (18%)

Query: 253 NVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGRENSSTSDADPSYVHLY 312
           N+V    AH S I+ +     G +L TAS +G  I +F  M G               L 
Sbjct: 192 NMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDG-------------TRLQ 238

Query: 313 RLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSYDDSFTTKNSGT 372
            ++RG   A I  I+ S + +W+ +SS +GT H+F++      V +   +DS++T+N   
Sbjct: 239 EVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLR-----VRVVG-EDSYSTEN--- 289

Query: 373 GAATNQIVCRPHSSALQ 389
           GA   Q   + +S++LQ
Sbjct: 290 GALLTQ---QNYSNSLQ 303


>AT2G40810.1 | Symbols: ATATG18C, ATG18C | homolog of yeast
           autophagy 18C | chr2:17032686-17034338 FORWARD
           LENGTH=393
          Length = 393

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 25/137 (18%)

Query: 253 NVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGRENSSTSDADPSYVHLY 312
           N+V    AH S I+ +     G +L TAS +G  I +F  M G               L 
Sbjct: 192 NMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDG-------------TRLQ 238

Query: 313 RLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSYDDSFTTKNSGT 372
            ++RG   A I  I+ S + +W+ +SS +GT H+F++      V +   +DS++T+N   
Sbjct: 239 EVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLR-----VRVVG-EDSYSTEN--- 289

Query: 373 GAATNQIVCRPHSSALQ 389
           GA   Q   + +S++LQ
Sbjct: 290 GALLTQ---QNYSNSLQ 303


>AT3G56440.1 | Symbols: ATATG18D, ATG18D | homolog of yeast
           autophagy 18 (ATG18) D | chr3:20926874-20928797 FORWARD
           LENGTH=391
          Length = 391

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)

Query: 253 NVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGRENSSTSDADPSYVHLY 312
           N+V    AH S I+ +     G +L TAS +G  I +F  M G               L 
Sbjct: 196 NMVQIINAHDSNIACMTLTLDGLLLATASTKGTLIRIFNTMDG-------------TRLQ 242

Query: 313 RLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAI 349
            ++RG   A I  I+ S + +W+ +SS +GT H+F++
Sbjct: 243 EVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSL 279