Miyakogusa Predicted Gene
- Lj3g3v1543490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1543490.1 tr|A9TJS1|A9TJS1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_170480,24.84,8e-16,PPR,Pentatricopeptide repeat; PPR:
pentatricopeptide repeat domain,Pentatricopeptide repeat;
PPR_2,P,CUFF.42785.1
(292 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G04790.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 224 4e-59
AT4G21880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 223 1e-58
AT2G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 5e-10
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 62 6e-10
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 60 2e-09
AT4G19440.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 60 2e-09
AT4G19440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 60 2e-09
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su... 58 6e-09
AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 58 7e-09
AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 9e-09
AT5G14770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 1e-08
AT1G73710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 56 2e-08
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ... 55 6e-08
AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 6e-08
AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 6e-08
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 7e-08
AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 7e-08
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor 22 ... 54 9e-08
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931... 54 1e-07
AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 54 2e-07
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 3e-07
AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 3e-07
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 5e-07
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ... 52 5e-07
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 6e-07
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 6e-07
AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 8e-07
AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 9e-07
AT5G39350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 1e-06
AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 1e-06
AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 51 1e-06
AT3G59040.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT3G59040.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat ... 50 1e-06
AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 1e-06
AT2G01860.1 | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-l... 50 2e-06
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381... 50 2e-06
AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR) sup... 50 2e-06
AT2G35030.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 ... 50 2e-06
AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ... 49 3e-06
AT3G13150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 4e-06
AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 49 4e-06
AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT2G37230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 4e-06
AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 49 4e-06
AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 5e-06
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110... 49 5e-06
AT5G03560.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 6e-06
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 48 7e-06
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 48 7e-06
AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 7e-06
>AT4G04790.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:2435007-2439344 REVERSE
LENGTH=821
Length = 821
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 182/292 (62%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I L ++KDFEGAY ML +LK N+ P + M+N I+A FRE+N+S + V +QM+ A
Sbjct: 449 IIRLCTRIKDFEGAYNMLGNLKNFNLEPNSSMFNCILAGYFREKNVSSALMVVKQMKEAG 508
Query: 61 IKPDSQTYSHLISNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVI 120
+KPDS T+ +LI+N E+ I KYYEE+K +G++ATK+I+ +LI+AYA+ G+ EKAKQV+
Sbjct: 509 VKPDSITFGYLINNCTQEDAITKYYEEMKQAGVQATKRIYMSLIDAYAASGKFEKAKQVL 568
Query: 121 LDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLIEHIRSDG 180
+DP +P + N++KSVL+S LAS G+ +A IY E+++ ++PK ++SLIE+ S G
Sbjct: 569 VDPDVPAINQNELKSVLISALASRGKWADALHIYEEMRKAECHVDPKSIISLIEYSDSKG 628
Query: 181 XXXXXXXXXXXSKGTDHWNDACCRIILYCIWNKQLSSAIDXXXXXXXXXXXXXXFMEVLF 240
+ W D R+IL+ + NK+ S +D +E F
Sbjct: 629 ELSTLVQLADDLQDDTSWIDGFFRMILFAVRNKKSSDIVDLLKRNKVRLLKKGIPVEAHF 688
Query: 241 DKVFSLIERSESNHLNTCLNLLSEIRDKIGTLPSQKCYDSLFCAPADAIDSE 292
D+VF I +E + ++ ++LL ++D++G +PS+KC D L A +A D E
Sbjct: 689 DEVFWAIAETEPSKVHLGMDLLRFMKDELGFVPSRKCLDFLLHACVNAKDLE 740
>AT4G21880.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:11605156-11610651 FORWARD
LENGTH=843
Length = 843
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 181/291 (62%)
Query: 2 IDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADI 61
I+L +++KDFEGAY ML +LK N+ P + MYN+IMA FRE+ ++ ++V ++M+ AD+
Sbjct: 470 INLCIRIKDFEGAYNMLGNLKNFNLAPNSSMYNSIMAGYFREKKVNSALKVLKEMKEADV 529
Query: 62 KPDSQTYSHLISNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVIL 121
KPDS T+S+LI+ E I KYY+E+K +G+ K ++ +L+ AYASCGQ EKAKQV++
Sbjct: 530 KPDSVTFSYLINYCGEEATIAKYYKEMKQAGVEVNKHVYMSLVKAYASCGQFEKAKQVLM 589
Query: 122 DPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLIEHIRSDGX 181
D +P + N++KSVL+S LAS+G + EA IY E+K++ +EPK ++SLIE+ S+
Sbjct: 590 DLEVPAKDHNELKSVLISALASNGNITEALSIYEEMKKLRCPVEPKAILSLIENSDSNAE 649
Query: 182 XXXXXXXXXXSKGTDHWNDACCRIILYCIWNKQLSSAIDXXXXXXXXXXXXXXFMEVLFD 241
+ + W D +II++ + N + SS +D +E F+
Sbjct: 650 LGTLVELTHELRDSKFWIDGFFKIIVFAVRNNRSSSILDLLEQTKNHLSKDDVGVEYWFE 709
Query: 242 KVFSLIERSESNHLNTCLNLLSEIRDKIGTLPSQKCYDSLFCAPADAIDSE 292
+VF I +ES+ + L+L+S +++++ PS+KC D L A +A D +
Sbjct: 710 EVFKSIAETESSDVKVGLDLVSFMKEELELCPSRKCLDFLLHACVNAKDKQ 760
>AT2G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:550340-552625 REVERSE
LENGTH=761
Length = 761
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MID K D E A + +++K +VP T YN+++ + + D V FE+M+
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 61 IKPDSQTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+PD TY+ LI+ + +++Y E+K +G++ ++ L++A+ G +++A
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 118 QVILDPLIPMRSLNQIK-----SVLVSVLASHGQLFEAFLIYNEIKQVG 161
+ +D MR + + + L+ G L +AF + NE+ QVG
Sbjct: 388 KFYVD----MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVG 432
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 5 FMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECF-RERNISDGVRVFEQMQCADIKP 63
F K+ + + D+ G PT YN IM +C +E ++ +FE+M+ + P
Sbjct: 237 FAKLGKTDDVKRFFKDMIGAGARPTVFTYN-IMIDCMCKEGDVEAARGLFEEMKFRGLVP 295
Query: 64 DSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQ----LEKA 116
D+ TY+ +I +D V ++EE+K + ALIN + G+ LE
Sbjct: 296 DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFY 355
Query: 117 KQVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLIE 174
+++ + L P N + S LV G + +A Y ++++VG SLI+
Sbjct: 356 REMKGNGLKP----NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 85/174 (48%), Gaps = 11/174 (6%)
Query: 8 MKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQT 67
++ E A +++++K + + +Y +M F+ N ++G+ + ++M+ DI+ T
Sbjct: 520 LEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT 579
Query: 68 YSHLISN---SETEEDIVKYYEELKHS-GMRATKQIFTALINAYASCGQLEKA----KQV 119
+ LI ++ V Y+ + + G++A IFTA+I+ Q+E A +Q+
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 639
Query: 120 ILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLI 173
+ L+P R+ + L+ G + EA + +++ ++G L+ SL+
Sbjct: 640 VQKGLVPDRT---AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLV 690
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
++D F K+ + AY +L+++ + P T +N +++ +E I + V +F +M
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 61 IKPDSQTYSHLISNSETEEDIVKY----YEELKHSGMRATKQIFTALINAYASCGQLEKA 116
KPD T++ LIS E D +K+ ++ G+ A + LINA+ G++++A
Sbjct: 490 CKPDVYTFNSLISGL-CEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548
Query: 117 KQVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHT 163
++++ + + L++I + L+ L G++ +A ++ ++ + GH
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA 596
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 12 EGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHL 71
E A +L+D+K + P Y+ +++ R ++ + +RV +M IKPD+ TYS L
Sbjct: 432 EDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSL 491
Query: 72 ISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQV 119
I ++ YEE+ G+ + +TALINAY G LEKA Q+
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
>AT4G19440.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10602006-10604483 REVERSE
LENGTH=825
Length = 825
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MID K + E + D++ N+ P T +YN ++ R +S + + E M+
Sbjct: 616 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 675
Query: 61 IKPDSQTYSHLISN----SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
I P+S TY+ LI S EE + +EE++ G+ +TALI+ Y GQ+ K
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKL-LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 734
Query: 117 KQVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVG 161
+ ++ + N+I +V++ A G + EA + NE+++ G
Sbjct: 735 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 780
>AT4G19440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10602006-10604483 REVERSE
LENGTH=825
Length = 825
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MID K + E + D++ N+ P T +YN ++ R +S + + E M+
Sbjct: 616 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 675
Query: 61 IKPDSQTYSHLISN----SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
I P+S TY+ LI S EE + +EE++ G+ +TALI+ Y GQ+ K
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKL-LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKV 734
Query: 117 KQVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVG 161
+ ++ + N+I +V++ A G + EA + NE+++ G
Sbjct: 735 ECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 780
>AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19832969-19834909 REVERSE
LENGTH=646
Length = 646
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MID +M++ D + A + D ++ ++V M + F D V VF +M+ D
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF----FKDAVEVFREMKKGD 269
Query: 61 IKPDSQTYSHLI------SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLE 114
I+P+ T ++ + E E + Y E+ SG+R + +ALI+ Y+ CG +E
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELGEWLHLYAED---SGIRIDDVLGSALIDMYSKCGIIE 326
Query: 115 KAKQVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDV 169
KA V +P ++ S +++ A HGQ +A + +++Q G + P DV
Sbjct: 327 KAIHVF--ERLPRENVITW-SAMINGFAIHGQAGDAIDCFCKMRQAG--VRPSDV 376
>AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28025153-28027840 REVERSE LENGTH=895
Length = 895
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID+F K FE AYK+ D N+ +N I+A R +N +F +M
Sbjct: 191 LIDVFSKNLRFEDAYKVFRDSLSANVY----CWNTIIAGALRNQNYGAVFDLFHEMCVGF 246
Query: 61 IKPDSQTYSHLISNSETEEDIVKYYEELKHSGMRATKQ---IFTALINAYASCGQLEKAK 117
KPDS TYS +++ + E + ++ + ++ ++ + + TA+++ YA CG + +A
Sbjct: 247 QKPDSYTYSSVLAACASLEKL-RFGKVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAM 305
Query: 118 QVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLI 173
+V IP S+ +V++S F A I+ E++ G + V S+I
Sbjct: 306 EVF--SRIPNPSVVSW-TVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVI 358
>AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8507794-8510038 REVERSE
LENGTH=722
Length = 722
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M+ + K + A + D + ++V T M +A + + + + +RVFE+M C+
Sbjct: 284 MVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ----EALRVFEEMCCSG 339
Query: 61 IKPDSQTYSHLISNSETEE--DIVKYYEELKH-SGMRATKQIFTALINAYASCGQLEKAK 117
IKPD + +IS D K+ H +G+ + I ALIN YA CG L+ +
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 118 QVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDV 169
V +P R++ S +++ L+ HG+ +A ++ +KQ +EP +V
Sbjct: 400 DVF--EKMPRRNVVSWSS-MINALSMHGEASDALSLFARMKQ--ENVEPNEV 446
>AT5G14770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4772881-4775697 REVERSE
LENGTH=938
Length = 938
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLI- 72
A ++ D++ +P T +N++M F ++ + + M A I P+ TY+ +I
Sbjct: 697 AAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIR 756
Query: 73 --SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQV----ILDPLIP 126
S++ +++ K+ E+K GMR + ALI+ A G ++ + + I D L+P
Sbjct: 757 GLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVP 816
Query: 127 MRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
S +VL+S A+ G++ +A + E+ + G
Sbjct: 817 KTS---TYNVLISEFANVGKMLQARELLKEMGKRG 848
>AT1G73710.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:27721190-27724165 FORWARD
LENGTH=991
Length = 991
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 6/153 (3%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLI- 72
A ++L ++ P Y A++A R +SD V ++E M+ +KP+ Y LI
Sbjct: 569 AQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLIN 628
Query: 73 --SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSL 130
+ S E+ ++Y+ ++ G+++ + T+LI AY+ G LE+A++V D +
Sbjct: 629 GFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRV-YDKMKDSEGG 687
Query: 131 NQIKS--VLVSVLASHGQLFEAFLIYNEIKQVG 161
+ + ++S+ A G + EA I+N +++ G
Sbjct: 688 PDVAASNSMLSLCADLGIVSEAESIFNALREKG 720
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MI + K K E A + +K P YN++ + + R+ +M +
Sbjct: 521 MIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSG 580
Query: 61 IKPDSQTYSHLISNS---ETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
KP +TY+ +I++ D V YE ++ +G++ + ++ +LIN +A G +E+A
Sbjct: 581 CKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAI 640
Query: 118 QVILDPLIPMRSLNQIKSVLVSVLASH---GQLFEAFLIYNEIK 158
Q ++ + VL S++ ++ G L EA +Y+++K
Sbjct: 641 QYFR--MMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMK 682
>AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29900617-29903127 FORWARD
LENGTH=836
Length = 836
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I K + A+K+ +K + P+ ++++++ + + ++V+ +MQ
Sbjct: 319 IIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFG 378
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+P + + LI + + + ++ ++E+K SG R ++T +I ++A G+LE A
Sbjct: 379 HRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAM 438
Query: 118 QVILD----PLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
V D +P S S L+ + A GQ+ A IYN + G
Sbjct: 439 TVFKDMEKAGFLPTPS---TYSCLLEMHAGSGQVDSAMKIYNSMTNAG 483
>AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:5434142-5436244 FORWARD
LENGTH=642
Length = 642
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 13/151 (8%)
Query: 22 KGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQM-QCADIKPDSQTYSHLISNSET--- 77
KG PT+ YN+++ +E V+ +M D PD+ TYS LIS+ E
Sbjct: 189 KGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGR 248
Query: 78 EEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSLNQIKSV- 136
+ ++ ++E+K + M+ T++I+T L+ Y G++EKA LD M+ +V
Sbjct: 249 NDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKA----LDLFEEMKRAGCSPTVY 304
Query: 137 ----LVSVLASHGQLFEAFLIYNEIKQVGHT 163
L+ L G++ EA+ Y ++ + G T
Sbjct: 305 TYTELIKGLGKAGRVDEAYGFYKDMLRDGLT 335
>AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8203873-8206341 REVERSE
LENGTH=822
Length = 822
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 16 KMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLIS-- 73
KML D+K P +N ++A C + RVF +M+ +PD T++ LIS
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 501
Query: 74 -NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILD 122
+E D K Y E+ +G A + AL+NA A G + VI D
Sbjct: 502 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISD 551
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID + K + A K+ +K VP T YNA+++ ++ ++ +++ M+
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG 451
Query: 61 IKPDSQTYSHLIS---NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCG 111
P+ T++ +++ N ++ + + + E+K G + F LI+AY CG
Sbjct: 452 CSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCG 505
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MI+ F+K+KD+ A+ + +D+ M P +YN I++ N+ ++ ++MQ
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLR 584
Query: 61 IKPDSQTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+P ++T+ +I D+ ++ ++ ++ G T F LIN Q+EKA
Sbjct: 585 HRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAV 644
Query: 118 QVILDPLIPMRSLNQ-IKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
+++ + + S N+ + ++ AS G +AF + ++ G
Sbjct: 645 EILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEG 689
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 14/165 (8%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID + + D A ++ +K + P Y + ++ C + +++ + E+M+
Sbjct: 735 LIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALG 794
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALIN----------AY 107
+KP+ +TY+ LI + + E + YEE+K G++ K ++ L+ AY
Sbjct: 795 VKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 854
Query: 108 ASCGQLEKAKQVILDPLI-PMRSLNQIKSVLVSVLASHGQLFEAF 151
G + K+++ LI M + L + AS G+L E
Sbjct: 855 IYSGVMTICKEMVEAGLIVDMGTAVHWSKCLCKIEASGGELTETL 899
>AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23985078-23986649 REVERSE
LENGTH=523
Length = 523
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+++ F + F+ A ++D + G VP +YN ++ + R++++ + VF M+
Sbjct: 155 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 214
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA- 116
I+ D+ TY+ LI SNS D + ++ + FTALI+ + G L +A
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAR 274
Query: 117 ---KQVILDPLIP 126
K++I ++P
Sbjct: 275 NLYKEMIRRSVVP 287
>AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor 22 |
chr3:4057027-4059193 REVERSE LENGTH=694
Length = 694
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 10 DFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYS 69
D A ++ DDL + P +NAI+ R + D + ++ MQ A + PDS T+
Sbjct: 68 DITFARQVFDDLPRPQIFP----WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFP 123
Query: 70 HLIS--NSETEEDIVKY-YEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIP 126
HL+ + + + ++ + ++ G A + LI YA C +L A+ V +P
Sbjct: 124 HLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLP 183
Query: 127 MRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQV 160
R++ ++ VS A +G+ EA I+++++++
Sbjct: 184 ERTIVSWTAI-VSAYAQNGEPMEALEIFSQMRKM 216
>AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 |
chr1:19312078-19314145 REVERSE LENGTH=650
Length = 650
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 91/178 (51%), Gaps = 9/178 (5%)
Query: 7 KMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQ 66
K+K + + + +K P YN ++A R + + + +FE+++ +D KPD
Sbjct: 454 KLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDII 513
Query: 67 TYSHLIS----NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILD 122
+Y+ LI+ N + +E V+ ++E++ G+ ++ L+ + ++E A + +
Sbjct: 514 SYNSLINCLGKNGDVDEAHVR-FKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEE 572
Query: 123 PLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVM-SLIEHIRS 178
L+ N + ++L+ L +G+ EA +Y+++KQ G L P + +++E ++S
Sbjct: 573 MLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQG--LTPDSITYTVLERLQS 628
>AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:16983638-16986681 FORWARD
LENGTH=444
Length = 444
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 19 DDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLISNS--- 75
DD+K + PT ++++ + + +SD E+M+ I PD Y+ LIS
Sbjct: 65 DDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGKC 124
Query: 76 ETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSLNQI 133
+ ++ ++ Y+E+K ++ Q F L+NA A GQL+ ++ D LNQ
Sbjct: 125 KNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQF 182
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIM-AECFRERNISDGVRVFEQMQCA 59
+ID F+K F A K+ DD+ ++ P YN+++ C +R + ++FE M
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDR-LDKAKQMFEFMVSK 394
Query: 60 DIKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
D PD TY+ LI S+ ED + + E+ H G+ +T LI G + A
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 117 ----KQVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQ 159
KQ++ D + P S+L+ L ++G+L +A +++ +++
Sbjct: 455 QKVFKQMVSDGVPPDI---MTYSILLDGLCNNGKLEKALEVFDYMQK 498
>AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23489840-23491519 FORWARD
LENGTH=559
Length = 559
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIM-AECFRERNISDGVRVFEQMQCA 59
+ID F+K F A K+ DD+ ++ P YN+++ C +R + ++FE M
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR-LDKAKQMFEFMVSK 319
Query: 60 DIKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
D PD TY+ LI S+ ED + + E+ H G+ +T LI G + A
Sbjct: 320 DCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379
Query: 117 ----KQVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQ 159
KQ++ D + P S+L+ L ++G+L +A +++ +++
Sbjct: 380 QKVFKQMVSDGVPPDI---MTYSILLDGLCNNGKLEKALEVFDYMQK 423
>AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:14275800-14277551 FORWARD
LENGTH=583
Length = 583
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 84/163 (51%), Gaps = 14/163 (8%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISD-GVRVFEQMQCA 59
++ + K D EGA ++ D + ++V +N++++ F + ++D ++VF QM+ +
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVA----WNSLVSG-FEQNGLADEAIQVFYQMRES 202
Query: 60 DIKPDSQTYSHLISNSETEEDIV---KYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
+PDS T+ L+S + ++ + G+ ++ TALIN Y+ CG + KA
Sbjct: 203 GFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKA 262
Query: 117 KQVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIK 158
++V M+ N + ++S +HG +A ++N+++
Sbjct: 263 REV----FDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKME 301
>AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24123983-24126706 REVERSE
LENGTH=907
Length = 907
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLIS 73
A ++ ++ G + P+ + +++ FR I D V++F +M ++KP+ TY+ +I
Sbjct: 491 ALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550
Query: 74 NSETEEDIVKYYE---ELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMR-S 129
E D+ K +E E+ G+ + LI+ GQ +AK V +D L
Sbjct: 551 GYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK-VFVDGLHKGNCE 609
Query: 130 LNQI-KSVLVSVLASHGQLFEAFLIYNEIKQVGHTLE 165
LN+I + L+ G+L EA + E+ Q G L+
Sbjct: 610 LNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLD 646
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 10/162 (6%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLIS 73
A+++ D++ N+ PT + N+++ R N SDG E+M PD +Y+ LI
Sbjct: 569 AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIY 628
Query: 74 NSETEEDIVKYYEELK-----HSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMR 128
EE++ K + +K G+ + ++++ + Q+++A +V+L +I R
Sbjct: 629 GFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA-EVVLRKMIE-R 686
Query: 129 SLNQIKSV---LVSVLASHGQLFEAFLIYNEIKQVGHTLEPK 167
+N +S +++ S L EAF I++E+ Q G + + K
Sbjct: 687 GVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDK 728
>AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19252463-19254193 REVERSE
LENGTH=576
Length = 576
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 14/164 (8%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F+K DF A+++L D+ P + +N I+ + F +M +
Sbjct: 260 LIDAFVKSGDFNNAFQVLSDMPN----PNSSSWNTILTGYVNSEKSGEATEFFTKMHSSG 315
Query: 61 IKPDSQTYSHLISNSETEEDIVKYYEELKHS-----GMRATKQIFTALINAYASCGQLEK 115
++ D YS I + V + L H+ G+ + + +ALI+ Y+ CG L+
Sbjct: 316 VRFDE--YSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGMLKH 373
Query: 116 AKQVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQ 159
A+ + +P ++L + + ++S A +G EA ++N++KQ
Sbjct: 374 AELMFWT--MPRKNL-IVWNEMISGYARNGDSIEAIKLFNQLKQ 414
>AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4353906-4355840 FORWARD
LENGTH=644
Length = 644
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F+K A ++L ++ + P T YN+++ +E + + +++ + M
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
PD T++ LI+ + +D ++ + E+ G+ A + L+ + G+LE AK
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 118 QVILDPLIPMRSLNQIKS--VLVSVLASHGQLFEAFLIYNEIKQ 159
+ + ++ R I S +L+ L +G+L +A I+ +I++
Sbjct: 459 K-LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501
>AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3218133-3219929 FORWARD
LENGTH=598
Length = 598
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M+ K E A ++L+ L P YN ++ + +++ ++M+ D
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 61 IKPDSQTYSHLISNSETE---EDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+KPD+ TYS L+ E ++ +K++ E + G+R F +++ Q ++A
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Query: 118 QVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVG 161
++ + N+ ++L+ LA G EA + NE+ G
Sbjct: 540 DFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6204940-6209691 REVERSE
LENGTH=1440
Length = 1440
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLIS 73
A ++LD ++ + P YN +++ C R+ N+ V+VFE M+ +PD TY+ +IS
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMIS 340
Query: 74 ---NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSL 130
+ + + EL+ G + +L+ A+A EK K+V M+ +
Sbjct: 341 VYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQ----MQKM 396
Query: 131 NQIK-----SVLVSVLASHGQLFEAFLIYNEIK 158
K + ++ + GQL A +Y ++K
Sbjct: 397 GFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMK 429
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 10 DFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYS 69
+ +GA K+ +D++ P YNA+++ R ++ R+F +++ PD+ TY+
Sbjct: 312 NLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYN 371
Query: 70 HLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILD-PLI 125
L+ + E + + Y++++ G + + +I+ Y GQL+ A Q+ D +
Sbjct: 372 SLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
Query: 126 PMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVG 161
R+ + I +VL+ L + EA + +E+ VG
Sbjct: 432 SGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVG 468
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I+ F K K E K+ ++ +V T YN ++ F+ ++ F QM
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395
Query: 61 IKPDSQTYSHLIS----NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
I PD TY+ L+ N E E+ +V +E+++ M +T +I G++E+A
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALV-IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEA 454
Query: 117 KQVILDPLIPMRSLNQIK------SVLVSVLASHGQLFEAFLIYNEIKQVG 161
L SL +K + ++S L + G L E +Y ++KQ G
Sbjct: 455 WS-----LFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
>AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:2014440-2015942 REVERSE
LENGTH=500
Length = 500
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+++ F + F A ++D + G+ P +YN I+ + ++ + V + M+
Sbjct: 155 LVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMG 214
Query: 61 IKPDSQTYSHLIS---NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I+PD TY+ LI+ +S T + ++ G+ F+ALI+ Y GQL +AK
Sbjct: 215 IRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAK 274
Query: 118 QVILDPLIPMRSLNQ---IKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
+ + + RS+N + L++ L HG L EA + N + G
Sbjct: 275 KQYNEMI--QRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319
>AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:654102-656561 FORWARD
LENGTH=819
Length = 819
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
++D++ K + A K+L+++ P+ YN++++ R+ + + + + QM
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379
Query: 61 IKPDSQTYSHLISNSETE---EDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
KPD TY+ L+S E E + +EE++++G + F A I Y + G+ +
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 118 QVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLI 173
++ + + S + + + L++V +G E ++ E+K+ G E + +LI
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
++ F + E A + ++++ P +NA + ++ +++F+++
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 61 IKPDSQTYSHLIS---NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+ PD T++ L++ + + ++ ++E+K +G ++ F LI+AY+ CG E+A
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 118 QV 119
V
Sbjct: 510 TV 511
>AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419399-23421288 FORWARD
LENGTH=629
Length = 629
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F K A K+ +++ ++ P T YN ++ + + ++F+ M D
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKD 393
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
P+ QTY+ LI+ + ED V+ + E+ G+ +T +I + G + A
Sbjct: 394 CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSA- 452
Query: 118 QVILDPLIPMRSLNQIK--SVLVSVLASHGQLFEAFLIYNEIKQ 159
Q++ ++ R I S+L+ L S+G+L A +I+ +++
Sbjct: 453 QMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQK 496
>AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2677122-2679179 REVERSE
LENGTH=685
Length = 685
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLIS 73
A+K+ D++ ++V T +++ R R + + +F++M +KPDS ++S
Sbjct: 165 AHKLFDEIPDRSVVTWTALFSGYTTSG-RHR---EAIDLFKKMVEMGVKPDSYFIVQVLS 220
Query: 74 ------NSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVI 120
+ ++ E IVKY EE++ M+ + T L+N YA CG++EKA+ V
Sbjct: 221 ACVHVGDLDSGEWIVKYMEEME---MQKNSFVRTTLVNLYAKCGKMEKARSVF 270
>AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:2134060-2136249 REVERSE
LENGTH=729
Length = 729
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M++L+ K A + D ++ +MV +N +++ N+S+ +++ +M+
Sbjct: 185 MLNLYCKCDHVGDAKDLFDQMEQRDMVS----WNTMISGYASVGNMSEILKLLYRMRGDG 240
Query: 61 IKPDSQTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
++PD QT+ +S S T D+ + ++ +G + TALI Y CG+ E +
Sbjct: 241 LRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASY 300
Query: 118 QVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLI 173
+V+ IP + + +V++S L G+ +A ++++E+ Q G L + + S++
Sbjct: 301 RVL--ETIPNKDV-VCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVV 353
>AT5G39350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:15750929-15752962 FORWARD
LENGTH=677
Length = 677
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 30 TGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLISNSETEEDI---VKYYE 86
TG ++AI+A C + +SD + +F++M+ D++P+ T + L+ D+ + +
Sbjct: 385 TGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHC 444
Query: 87 ELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSLNQI-KSVLVSVLASHG 145
L +G ++ T L++ Y+ CG LE A ++ +S + + L+S HG
Sbjct: 445 YLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHG 504
Query: 146 QLFEAFLIYNEIKQVGHT 163
A ++ E+ + G T
Sbjct: 505 DGHNALQVFMEMVRSGVT 522
>AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23451144-23452201 FORWARD
LENGTH=323
Length = 323
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I+ +K A ++ D+ + PTT YN+++ ++ ++D R+ + M
Sbjct: 152 LINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS 211
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
PD T+S LI+ ++ ++ ++ + E+ G+ A +T LI+ + G L+ A+
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271
Query: 118 QVILDPLIPMRSLNQI--KSVLVSVLASHGQLFEAFLIYNEI-KQVGHTLE 165
++ + + N I +S+L S L S +L +AF I ++ K GH LE
Sbjct: 272 DLLNVMISSGVAPNYITFQSMLAS-LCSKKELRKAFAILEDLQKSEGHHLE 321
>AT5G12100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:3911388-3913838 FORWARD LENGTH=816
Length = 816
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID + K + E ++K+ + +K ++ P+ +N ++ F+ + D V ++M+
Sbjct: 255 LIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
PD+ T+S L S++E E + YE SG++ + L+NA G++EKA+
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAE 374
Query: 118 QVI 120
+++
Sbjct: 375 EIL 377
>AT3G59040.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:21821495-21823919 REVERSE
LENGTH=590
Length = 590
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I + K+ +F GA ++L L M P Y A+M R ++ +F +MQ +
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 211
Query: 61 IKPDSQTYSHLISNSETEEDIVKYYEEL-------KHSGMRATKQIFTALINAYASCGQL 113
+P + TY +I + E D K EE+ K S ++ ++++ +I Y G
Sbjct: 212 PEPSAITY-QIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 270
Query: 114 EKAKQVI 120
EKA++V
Sbjct: 271 EKARKVF 277
>AT3G59040.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:21821495-21824233 REVERSE
LENGTH=583
Length = 583
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I + K+ +F GA ++L L M P Y A+M R ++ +F +MQ +
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204
Query: 61 IKPDSQTYSHLISNSETEEDIVKYYEEL-------KHSGMRATKQIFTALINAYASCGQL 113
+P + TY +I + E D K EE+ K S ++ ++++ +I Y G
Sbjct: 205 PEPSAITY-QIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263
Query: 114 EKAKQVI 120
EKA++V
Sbjct: 264 EKARKVF 270
>AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr1:1721523-1723025
FORWARD LENGTH=500
Length = 500
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MID +M+ + A KM D + +++ T M N + + ++E + + F +MQ +
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQE----EALLWFREMQISG 201
Query: 61 IKPDSQTYSHLIS--NSETEEDIVKY----YEELKHSGMRATKQIFTALINAYASCGQLE 114
+KPD Y +I+ N+ T + + + + + ++ +LI+ Y CG +E
Sbjct: 202 VKPD---YVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVE 258
Query: 115 KAKQVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
A+QV + + R++ SV+V A++G E+ + + ++++ G
Sbjct: 259 FARQVFYN--MEKRTVVSWNSVIVG-FAANGNAHESLVYFRKMQEKG 302
>AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:20370293-20372848 FORWARD
LENGTH=851
Length = 851
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F K + E A + +L + P+ +YN++++ N+ + ++++M
Sbjct: 660 LIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDG 719
Query: 61 IKPDSQTYSHLISNSETEEDIV---KYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
++ D TY+ LI + +++ + Y E++ G+ + I+T ++N + GQ K
Sbjct: 720 LRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVV 779
Query: 118 QVILDPLIPMRSLNQIKSVLV--SVLASH---GQLFEAFLIYNEIKQVG 161
++ + M+ N +VL+ +V+A H G L EAF +++E+ G
Sbjct: 780 KMFEE----MKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKG 824
>AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:13844834-13846708 FORWARD
LENGTH=624
Length = 624
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I+ ++K +DF G +L +K +V Y +M + +SD ++F++M+
Sbjct: 265 IINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERG 324
Query: 61 IKPDSQTYSHLISNSETEEDIVK---YYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I+ D Y+ LIS + + ++ + ++EL G+ + + ALI+ G++ A+
Sbjct: 325 IESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAE 384
Query: 118 QVILDPLIPMRSLNQIKSVLVSVLASH---GQLFEAFLIYNEIKQVG 161
IL + + +N + V +++ + G + EA +IY+ ++Q G
Sbjct: 385 --ILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKG 429
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Query: 5 FMKMKDFEGAYKML-DDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKP 63
F ++K ++ A + L ++G + T N I C +E N+ + R+F +M ++P
Sbjct: 444 FNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYC-KEGNVEEAKRLFVEMSSKGVQP 502
Query: 64 DSQTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVI 120
++ TY+ +I + I K ++ +GM +T+LI+ +++A ++
Sbjct: 503 NAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLF 562
Query: 121 LDPLIPMRSLNQ---IKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLIEHIR 177
+ + ++ L+Q +V++S L+ G+ EAF +Y+E+K+ G+T++ K +LI +
Sbjct: 563 SE--MGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSMH 620
Query: 178 S 178
S
Sbjct: 621 S 621
>AT2G01860.1 | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:388283-389743 FORWARD
LENGTH=486
Length = 486
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 6 MKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDS 65
+K+ +FE + D K N P+ MY ++ + E+ + + V +M+ ++ D
Sbjct: 339 VKLGEFELVESLFDWFKASNREPSVVMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDL 398
Query: 66 QTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQV 119
Y +I +D+ ++YY +LK +G T I+ +I+ Y + G+L K K++
Sbjct: 399 PAYRVVIKLFVALDDLGRAMRYYSKLKEAGFSPTYDIYRDMISVYTASGRLTKCKEI 455
>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
chr2:16381647-16384250 FORWARD LENGTH=867
Length = 867
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F K D + AY + +L + ++P +YN++++ + + ++++M
Sbjct: 666 LIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDG 725
Query: 61 IKPDSQTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I D TY+ +I + +I Y EL G+ + + L+N + GQ KA
Sbjct: 726 ISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKAS 785
Query: 118 QVILDPLIPMRSLNQIKSVLV--SVLASH---GQLFEAFLIYNEIKQVG 161
+++ + M+ + +VL+ +V+A H G L EAF +++E+ + G
Sbjct: 786 KMLEE----MKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKG 830
>AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:16599976-16605994 REVERSE
LENGTH=1089
Length = 1089
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 28 PTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLISN---SETEEDIVKY 84
PT +N +M+ C ++I V +Q + + D + Y+ LIS+ S + + +
Sbjct: 465 PTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEV 524
Query: 85 YEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSLN-----QIKSVLVS 139
+ ++ +SG+ A F ALI+ A GQ+ KA +RS N + + L+S
Sbjct: 525 FHQMSNSGVEANLHTFGALIDGCARAGQVAKA----FGAYGILRSKNVKPDRVVFNALIS 580
Query: 140 VLASHGQLFEAFLIYNEIKQVGHTLEPKDV 169
G + AF + E+K H ++P +
Sbjct: 581 ACGQSGAVDRAFDVLAEMKAETHPIDPDHI 610
>AT2G35030.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:14761080-14762963 REVERSE
LENGTH=627
Length = 627
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQM-QCA 59
MI F++ ++ A + D + N++ T M + E + + VF +M +
Sbjct: 270 MITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENE----EALNVFSKMLRDG 325
Query: 60 DIKPDSQTYSHLISNSETEEDIV---KYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
+KP+ TY ++S +V + ++ + S + + + +AL+N Y+ G+L A
Sbjct: 326 SVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAA 385
Query: 117 KQVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSL 172
+++ + L+ R L S +++V A HG EA +YN++++ H +P V L
Sbjct: 386 RKMFDNGLVCQRDLISWNS-MIAVYAHHGHGKEAIEMYNQMRK--HGFKPSAVTYL 438
>AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24900186-24903110 REVERSE
LENGTH=974
Length = 974
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 33 YNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLISNSETEEDIVK---YYEELK 89
Y +M F+ + D +F +M+ I PD +Y LI+ ++ K ++E+
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Query: 90 HSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSLNQIK-SVLVSVLASHGQLF 148
G+ I+ L+ + G++EKAK+++ + + N + ++ G L
Sbjct: 655 EEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLA 714
Query: 149 EAFLIYNEIKQVG 161
EAF +++E+K G
Sbjct: 715 EAFRLFDEMKLKG 727
>AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 |
chr5:21350375-21352141 FORWARD LENGTH=588
Length = 588
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
++ L+ K EGAY++ +++ N+ G++NA++ + + + +F++M+ +
Sbjct: 258 LVSLYSKCGVPEGAYQVFNEVPVKNL----GIWNAMLKAYAQHSHTQKVIELFKRMKLSG 313
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+KP+ T+ +++ S++ ++ Y++++K S + T + + +L++ G+L++A
Sbjct: 314 MKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEAL 373
Query: 118 QVILD-PLIPMRSL 130
+VI + P+ P S+
Sbjct: 374 EVITNMPIDPTESV 387
>AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26201012-26203759 REVERSE
LENGTH=915
Length = 915
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 14 AYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADIKPDSQTYSHLIS 73
A +L+ + ++P YN+++ R N R+ M + PD TY+ +I
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505
Query: 74 N---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAKQVILDPLIPMRSL 130
+ S+ E+ ++ L+ G+ ++TALI+ Y G++++A ++L+ ++ L
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA-HLMLEKMLSKNCL 564
Query: 131 -NQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHTLEPKDVMSLIEHIRSDG 180
N + + L+ L + G+L EA L+ ++ ++G LI + DG
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDG 616
>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
chr1:28119237-28122314 REVERSE LENGTH=862
Length = 862
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+++ F K++ E +L ++ +P YN ++ + +I + + VF QMQ A
Sbjct: 288 LVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG 347
Query: 61 IKPDSQTYS---HLISNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
P++ TYS +L S +D+ + + E+K S + LI + G ++
Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVV 407
Query: 118 QVILD 122
+ D
Sbjct: 408 TLFHD 412
>AT3G13150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4227975-4229630 REVERSE
LENGTH=551
Length = 551
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+++ F + + F ++ D +K N+ P YN+ + R + +D + + + M+
Sbjct: 234 LLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEG 293
Query: 61 IKPDSQTYSHLISNSETE---EDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I PD TY+ LI+ + E+++K Y E+K G+ + LI G L++A
Sbjct: 294 ISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAV 353
Query: 118 QV 119
+V
Sbjct: 354 EV 355
>AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532541 FORWARD
LENGTH=886
Length = 886
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M+ + K F K+LD++ P T YN ++ R +++ + VF QMQ A
Sbjct: 370 MVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAG 429
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
KPD TY LI + + + + Y+ ++ G+ ++ +IN G L A
Sbjct: 430 CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAH 489
Query: 118 QVI 120
++
Sbjct: 490 KLF 492
>AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587298-23588220 FORWARD
LENGTH=257
Length = 257
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I+ F+K + A ++ ++ ++ PTT YN+++ ++ + D R+ + M
Sbjct: 86 LINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKG 145
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
PD T+S LI+ ++ ++ ++ + E+ G+ A +T LI+ + G L+ A+
Sbjct: 146 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 205
Query: 118 QVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEI-KQVGHTLE 165
++ + + + + I +++ L S +L +AF I ++ K H LE
Sbjct: 206 DLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEDHHLE 255
>AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:17859582-17861261 REVERSE
LENGTH=559
Length = 559
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID+++K + A ++ +L+ + V M + ++ C R + + + +F MQ +
Sbjct: 245 LIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLV-HCERSK---EAIDLFSLMQTSS 300
Query: 61 -IKPDSQTYSHLISN--SETEEDIVKY-YEELKHSGMRATKQIFTALINAYASCGQLEKA 116
IKPD + ++S S D ++ +E + +G++ I TA+++ YA CG +E A
Sbjct: 301 GIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETA 360
Query: 117 KQVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVG 161
L+ +RS N + L+ LA HG E+ + E+ ++G
Sbjct: 361 ----LEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLG 402
>AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3134107-3135930 REVERSE
LENGTH=607
Length = 607
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+++ F K + A K+ D++ ++ PT +N ++ + N+ +G R+ QM+ +
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSR 305
Query: 61 IKPDSQTYSHLISNSETEEDIV----KYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
+PD TYS LI N+ +E+ + ++E+ G+ IFT LI+ ++ G+++
Sbjct: 306 TRPDVFTYSALI-NALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLM 364
Query: 117 KQ 118
K+
Sbjct: 365 KE 366
>AT2G37230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15637177-15639450 REVERSE
LENGTH=757
Length = 757
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
MI+ F + K + A K+ ++KG + P+ Y ++ + DG+R+FE+M+ +
Sbjct: 296 MINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSG 355
Query: 61 IKPDSQTYSHLI 72
I+P++ TYS L+
Sbjct: 356 IEPNATTYSTLL 367
>AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M+ + K F K+LD++ P T YN ++ R +++ + VF QMQ A
Sbjct: 370 MVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAG 429
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
KPD TY LI + + + + Y+ ++ G+ ++ +IN G L A
Sbjct: 430 CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAH 489
Query: 118 QVI 120
++
Sbjct: 490 KLF 492
>AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M+ + K F K+LD++ P T YN ++ R +++ + VF QMQ A
Sbjct: 370 MVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAG 429
Query: 61 IKPDSQTYSHLI---SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
KPD TY LI + + + + Y+ ++ G+ ++ +IN G L A
Sbjct: 430 CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAH 489
Query: 118 QVI 120
++
Sbjct: 490 KLF 492
>AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478860-16480443 REVERSE
LENGTH=527
Length = 527
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F+K F A ++ +++ M++ P Y +++ E + + ++F M+
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
PD Y+ LI+ + +D +K + E+ G+ +T LI + G+ A+
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372
Query: 118 QV---ILDPLIP--MRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQ 159
+V ++ +P +R+ N VL+ L +G++ +A +I+ ++++
Sbjct: 373 EVFSHMVSRGVPPNIRTYN----VLLHCLCYNGKVKKALMIFEDMQK 415
>AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:7966066-7967925 REVERSE
LENGTH=619
Length = 619
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID+F+K A ++ +++ + P T YN+++ +E + + ++F+ M
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
+PD TYS LI++ ++ +D ++ + E+ G+ + L+ + G+L AK
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440
Query: 118 QVILDPL---IPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVGHTL 164
++ + + +P + +L+ L +G+L +A I+ ++++ TL
Sbjct: 441 ELFQEMVSRGVPPSVVTY--GILLDGLCDNGELNKALEIFEKMQKSRMTL 488
>AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080
FORWARD LENGTH=681
Length = 681
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 2 IDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCADI 61
I +F D E A K+ D+ ++V +N ++ + + V++ M+ +
Sbjct: 198 IHMFASCGDMENARKVFDESPVRDLVS----WNCLINGYKKIGEAEKAIYVYKLMESEGV 253
Query: 62 KPDSQTYSHLISNSETEEDIVK---YYEELKHSGMRATKQIFTALINAYASCGQLEKAKQ 118
KPD T L+S+ D+ + +YE +K +G+R T + AL++ ++ CG + +A++
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARR 313
Query: 119 V 119
+
Sbjct: 314 I 314
>AT5G03560.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:901452-902719 REVERSE
LENGTH=363
Length = 363
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
M D K A ++ +K N +P + AI+ + ++VF +M +
Sbjct: 203 MFDALSKDGRTHEALELFSQIKDKNRMPDVVAHTAIVEAYANAGQAKETLKVFMRMLASG 262
Query: 61 IKPDSQTYSHLI----SNSETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKA 116
+ P++ TYS LI ++ +T +D KY E+ +GM +TA+ A+ G+ E A
Sbjct: 263 VSPNAYTYSVLIKGLAADGKTHKDAKKYLLEMMGNGMSPNAATYTAVFEAFVREGKEESA 322
Query: 117 KQVI 120
++++
Sbjct: 323 RELL 326
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F K D A K ++ ++ P Y AI++ + ++ + ++F +M C
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
++PDS T++ LI+ + +D + + + +G +T LI+ G L+ A
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 118 QVILDPL-IPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
+++ + I ++ + +V+ L G + EA + E + G
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I L ++ A + ++ ++P T +Y ++ + +I + F +M D
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381
Query: 61 IKPDSQTYSHLISNSETEEDIV---KYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I PD TY+ +IS D+V K + E+ G+ FT LIN Y G ++ A
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441
Query: 118 QVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHTLEP 166
+V + S N + + L+ L G L A + +E+ ++G L+P
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG--LQP 489
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID F K D A K ++ ++ P Y AI++ + ++ + ++F +M C
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Query: 61 IKPDSQTYSHLISN---SETEEDIVKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
++PDS T++ LI+ + +D + + + +G +T LI+ G L+ A
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 118 QVILDPL-IPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQVG 161
+++ + I ++ + +V+ L G + EA + E + G
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+I L ++ A + ++ ++P T +Y ++ + +I + F +M D
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381
Query: 61 IKPDSQTYSHLISNSETEEDIV---KYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I PD TY+ +IS D+V K + E+ G+ FT LIN Y G ++ A
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441
Query: 118 QVILDPLIPMRSLNQIK-SVLVSVLASHGQLFEAFLIYNEIKQVGHTLEP 166
+V + S N + + L+ L G L A + +E+ ++G L+P
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG--LQP 489
>AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:15510901-15512691 FORWARD
LENGTH=596
Length = 596
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 1 MIDLFMKMKDFEGAYKMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGVRVFEQMQCAD 60
+ID + +M D + A ++ + ++ P YN+I+ + + I + R+ +M
Sbjct: 313 LIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKK 372
Query: 61 IKPDSQTYSHLISNSETEEDI---VKYYEELKHSGMRATKQIFTALINAYASCGQLEKAK 117
I+PD+ T + LI+ ED+ VK +++ SG++ + ALI+ + +LE AK
Sbjct: 373 IEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAK 432
Query: 118 QVILDPLIPMRSLNQIKSVLVSVLASHGQLFEAFLIYNEIKQ 159
+ + + I+ A++ L + F YN+ KQ
Sbjct: 433 EEL---------FSMIEKGFSPGYATYSWLVDGF--YNQNKQ 463