Miyakogusa Predicted Gene

Lj3g3v1541430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541430.1 Non Chatacterized Hit- tr|F6I1L4|F6I1L4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,65.62,2e-18,seg,NULL; PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_22172_length_1694_cov_64.429161.path2.1
         (538 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2...   117   2e-26
AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II | chr5:17...    76   5e-14
AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II | chr1:24...    76   5e-14
AT2G36480.2 | Symbols:  | ENTH/VHS family protein | chr2:1530256...    53   6e-07
AT2G36480.1 | Symbols:  | ENTH/VHS family protein | chr2:1530311...    53   6e-07
AT2G36480.3 | Symbols:  | ENTH/VHS family protein | chr2:1530256...    53   6e-07

>AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 |
           chr4:2472083-2475417 FORWARD LENGTH=808
          Length = 808

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 64/81 (79%)

Query: 458 VSSQRPTVPYSNLFSSLVAQGVISFPNQAPAQDSVGIEFNLDILKVRHESAISALYGDLP 517
            S+Q P   +S L  SL+AQG+IS  NQ   Q  +G+EF+ D+LK+R+ESAISALYGDLP
Sbjct: 591 ASNQPPGGAFSGLIGSLMAQGLISLNNQPAGQGPLGLEFDADMLKIRNESAISALYGDLP 650

Query: 518 RQCTTCGLRFKCQDEHSNHMD 538
           RQCTTCGLRFKCQ+EHS HMD
Sbjct: 651 RQCTTCGLRFKCQEEHSKHMD 671



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 20/134 (14%)

Query: 13  DNSTGRTIERESP-HHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQTMTYSLSNGQQ 71
           D  T R+ +  +P + A +YG+ +   R++E  EW+RK+              +L  G  
Sbjct: 263 DGFTRRSNDGANPSNQAFNYGMGRATSRDDEHMEWRRKE--------------NLGQGND 308

Query: 72  RQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVSTTSWQNTEEEEFDWEDMSPTL 131
            + PRALIDAYG D S+  + +KP        NG+     T WQNTEEEEFDWEDMSPTL
Sbjct: 309 HERPRALIDAYGVDTSKHVTINKPIR----DMNGMHSKMVTPWQNTEEEEFDWEDMSPTL 364

Query: 132 VEHNRNNGFLQSTT 145
            + +R   FL+S+ 
Sbjct: 365 -DRSRAGEFLRSSV 377


>AT5G43620.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr5:17522653-17523885 FORWARD LENGTH=410
          Length = 410

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 492 VGIEF-NLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           VG+ F N   L VRHES I +LY D+PRQCT+CG+RFKCQ+EHS HMD
Sbjct: 220 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCTSCGVRFKCQEEHSKHMD 267


>AT1G66500.1 | Symbols:  | Pre-mRNA cleavage complex II |
           chr1:24811262-24812512 REVERSE LENGTH=416
          Length = 416

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 492 VGIEF-NLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           VG+ F N   L VRHES I +LY D+PRQC++CGLRFKCQ+EHS HMD
Sbjct: 227 VGLSFDNPSSLNVRHESVIKSLYSDMPRQCSSCGLRFKCQEEHSKHMD 274


>AT2G36480.2 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=844
          Length = 844

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 489 QDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           +D +G++F  D ++  H S IS+L+ DLP  CT+C +R K ++E   HM+
Sbjct: 652 KDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHME 701


>AT2G36480.1 | Symbols:  | ENTH/VHS family protein |
           chr2:15303114-15306274 REVERSE LENGTH=830
          Length = 830

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 489 QDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           +D +G++F  D ++  H S IS+L+ DLP  CT+C +R K ++E   HM+
Sbjct: 652 KDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHME 701


>AT2G36480.3 | Symbols:  | ENTH/VHS family protein |
           chr2:15302567-15306274 REVERSE LENGTH=886
          Length = 886

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 489 QDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMD 538
           +D +G++F  D ++  H S IS+L+ DLP  CT+C +R K ++E   HM+
Sbjct: 652 KDLIGLKFRADKIRELHPSVISSLFDDLPHLCTSCSVRLKQKEELDRHME 701