Miyakogusa Predicted Gene

Lj3g3v1541250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1541250.1 Non Chatacterized Hit- tr|I1JKM9|I1JKM9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.4975
PE=,84.96,0,RING/U-box,NULL; ZF_RING_1,Zinc finger, RING-type,
conserved site; ZF_RING_2,Zinc finger,
RING-type;,NODE_48212_length_1264_cov_72.564873.path2.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01350.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING...   171   1e-43
AT5G06420.2 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING...   169   3e-43
AT5G06420.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING...   169   3e-43
AT4G01023.1 | Symbols:  | RING/U-box superfamily protein | chr4:...   106   3e-24
AT1G74990.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    48   2e-06

>AT1G01350.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein | chr1:136732-137970 FORWARD
           LENGTH=343
          Length = 343

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 95/112 (84%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDDDSLPFACFICRQP 60
           +HDRGDYK GWQ+EK+W++AEK RK   A G +  ++ A+   +ED+++LPFACFICR+P
Sbjct: 224 LHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDEDDEADKDSDEDENALPFACFICREP 283

Query: 61  FVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAED 112
           FVDPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT+G FN A EI+K+MAE+
Sbjct: 284 FVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAHEIKKRMAEE 335


>AT5G06420.2 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein | chr5:1961521-1962870 FORWARD
           LENGTH=378
          Length = 378

 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 95/112 (84%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDDDSLPFACFICRQP 60
           +HDRGDYK GWQ+EK+W++AEK RK   A G +  ++ A+   +ED+++LPFACFICR+P
Sbjct: 259 LHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDDDDEADKDSDEDENALPFACFICREP 318

Query: 61  FVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAED 112
           F+DPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT+G FN A EI+K+MAE+
Sbjct: 319 FLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAHEIKKRMAEE 370


>AT5G06420.1 | Symbols:  | Zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein | chr5:1961521-1962870 FORWARD
           LENGTH=378
          Length = 378

 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 95/112 (84%)

Query: 1   MHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDDDSLPFACFICRQP 60
           +HDRGDYK GWQ+EK+W++AEK RK   A G +  ++ A+   +ED+++LPFACFICR+P
Sbjct: 259 LHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDDDDEADKDSDEDENALPFACFICREP 318

Query: 61  FVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAED 112
           F+DPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT+G FN A EI+K+MAE+
Sbjct: 319 FLDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTMGIFNAAHEIKKRMAEE 370


>AT4G01023.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:445844-446720 FORWARD LENGTH=236
          Length = 236

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query: 41  VTDEEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFN 100
           +T EEDDD+LP AC IC+ PF+DPVVT C HYFC+ CALKHH +N  CFVCN+PTLG F+
Sbjct: 73  LTGEEDDDALPLACSICQNPFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFD 132

Query: 101 VA 102
            A
Sbjct: 133 TA 134


>AT1G74990.1 | Symbols:  | RING/U-box superfamily protein |
          chr1:28159837-28160250 REVERSE LENGTH=137
          Length = 137

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 41 VTDEEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCA---LKHHAKNKKCFVC 91
          +T+EEDD S  F C IC +   +P+VT C H FC  C    L +H+K+  C VC
Sbjct: 6  ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVC 59