Miyakogusa Predicted Gene

Lj3g3v1531180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1531180.1 Non Chatacterized Hit- tr|K4BD36|K4BD36_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,41.41,1e-18,seg,NULL; LEA_2,Late embryogenesis abundant
protein, LEA-14,gene.g47590.t1.1
         (128 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54200.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    64   4e-11
AT1G64065.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    53   4e-08
AT3G05975.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    49   1e-06

>AT3G54200.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr3:20065731-20066438 FORWARD LENGTH=235
          Length = 235

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query: 9   ITIVNPNYGSFNYINSTAYVNYDNTIVGEVPIGAAFVPARGTVNVTTGAIFMVGKLIQDP 68
           +++ NPN   F+Y +S+A +NY   ++GE P+ A  + AR TV +      M  +L+ + 
Sbjct: 115 LSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSET 174

Query: 69  KFWSDVVSGSLNLTSTAELPGKASILKFIKLK 100
           +  SDV++G + L +  ++ GK ++LK  K+K
Sbjct: 175 QLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIK 206


>AT1G64065.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr1:23778628-23779272 FORWARD LENGTH=214
          Length = 214

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 2   NVTLDTLITIVNPNYGSFNYINSTAYVNY-DNTIVGEVPIGAAFVPARGTVNVTTGAIFM 60
           N TL + I+I N N+G+F + +ST  V Y D+ +VGE  I    V A  TV + TG +  
Sbjct: 91  NATLVSDISIRNSNFGAFEFEDSTLRVVYADHGVVGETKIEGRRVEAHKTVRI-TGVVVE 149

Query: 61  VG--KLIQDPKFWSDVVSGSLNLTSTAELPGKASILKFIKLKAT 102
           +G  +L+       D+  G L L S AE+ G+  +L   + K +
Sbjct: 150 IGSFRLLDTKDLDKDLRLGFLELRSVAEVRGRIKVLGRKRWKVS 193


>AT3G05975.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr3:1792145-1792714 REVERSE LENGTH=189
          Length = 189

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 1   MNVTLDTLITIVNPNYGSFNYINSTAYVNYDNTIVGEVPIGAAFVPARGTVNVTTGAIFM 60
           +N TL   + + NPN   F Y      V Y +T+VG + + ++ +PA+G+V +       
Sbjct: 60  LNFTLTLEMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQ 119

Query: 61  VGKLIQD-PKFWSDVVSGSLNLTSTAELPGKASILKFIKL 99
           + K + +      DV+ G + + + A++PGK ++L   K+
Sbjct: 120 LDKFVANLGDIVQDVLHGKIVMETRAKMPGKITLLGIFKI 159