Miyakogusa Predicted Gene

Lj3g3v1461480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1461480.1 tr|A9SXN2|A9SXN2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_85367
,36.54,0.000000000000002,EF-hand,NULL; EF_HAND_2,EF-HAND 2;
UIM,Ubiquitin interacting motif; no description,EF-hand-like
doma,CUFF.42646.1
         (291 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73440.1 | Symbols:  | calmodulin-related | chr1:27611418-276...   137   7e-33
AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family pr...    54   1e-07

>AT1G73440.1 | Symbols:  | calmodulin-related |
           chr1:27611418-27612182 FORWARD LENGTH=254
          Length = 254

 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 122/258 (47%), Gaps = 34/258 (13%)

Query: 32  PQQPIMSEYEQQRLHRIAENRARLEALGLPQMASSLKGLPRTRSKTKGKEKVADDDKEYQ 91
           P +  +S+YE+QRL RIAEN+ARL+ALG+ + A +L        K + K    ++D +Y 
Sbjct: 28  PTKGTISKYEKQRLSRIAENKARLDALGISKAAKALLSPSPVSKKRRVKRNSGEEDDDYT 87

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXF--APQNASGSRKRKVMNKSLXXXXXXXXXXXXXXXE 149
                                  F    +N S + KRKV ++ +                
Sbjct: 88  PVIADGDGDEDDDEVEEIDEDEEFLCKRKNKSSASKRKVSSRKILNTSVSLGEDDDD--- 144

Query: 150 CIXXXXXXALRQAIALSLQDSAEXXXXXXXXXXXXXXXXXXENLHIQEDXXXXXXXXSFT 209
                    L +AIALSLQ S                         +E            
Sbjct: 145 ---------LDKAIALSLQGSVAGSD--------------------KEAATMKKKRPELM 175

Query: 210 SRLQMTEDELIVHFFQLDEAGKGCLGIRDIERAATAHDFMWSDKELADMIRCFDSDGDRK 269
           S+ QMT+DEL+++F Q DE GKG + +RD+ + AT HDF W+++EL DMIRCFD D D K
Sbjct: 176 SKTQMTQDELVMYFCQFDEGGKGFITLRDVAKMATVHDFTWTEEELQDMIRCFDMDKDGK 235

Query: 270 LSLDDFRKIAVRCNMIKG 287
           LSLD+FRKI  RC M+KG
Sbjct: 236 LSLDEFRKIVSRCRMLKG 253


>AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family
          protein | chr4:51166-53449 REVERSE LENGTH=257
          Length = 257

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 32 PQQPIMSEYEQQRLHRIAENRARLEALGLPQMASSLKGLPRTRSKTK 78
          P +  +SEYE+QRL RIAEN+ARL+ALG+P +A SL+G     S+TK
Sbjct: 28 PIKGKISEYEKQRLSRIAENKARLDALGIPAIALSLQGSVAGGSRTK 74



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 228 EAGKGCLGIRDIERAATAHDFMWSDKELADMIRCFDSDGDRKL 270
           E GKG +  RD+ + AT HDF W+++EL DMIR FD D D K+
Sbjct: 91  EGGKGFITRRDVAKMATVHDFTWTEEELQDMIRSFDMDKDGKV 133