Miyakogusa Predicted Gene
- Lj3g3v1461450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1461450.1 Non Chatacterized Hit- tr|D7SHN7|D7SHN7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,29.65,0.000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.42644.1
(350 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G60590.3 | Symbols: | unknown protein; BEST Arabidopsis thal... 362 e-100
AT3G60590.2 | Symbols: | unknown protein; LOCATED IN: chloropla... 360 e-100
AT3G60590.4 | Symbols: | unknown protein; LOCATED IN: chloropla... 315 3e-86
AT3G60590.1 | Symbols: | unknown protein; LOCATED IN: chloropla... 315 3e-86
AT1G48460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 52 5e-07
>AT3G60590.3 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G48460.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr3:22398228-22399753 FORWARD LENGTH=404
Length = 404
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/343 (54%), Positives = 242/343 (70%), Gaps = 19/343 (5%)
Query: 1 MSRGMASLTQTHYPINTSTLRRAHPRSQKLLKSGKL-FQLQGLSFPSIHINQSRVCCT-K 58
+S+GM SLT++ + T +R +P + LK+G F+ + L RV CT K
Sbjct: 77 VSQGMVSLTKSLCTM-TPRVRLKNPNMLQKLKTGSCNFRFRNL----------RVLCTPK 125
Query: 59 LTPWEPSPVTYAPTDKQSDNFLQNSANIFETLDSSETAESPTANAEGLKETKYQPGLQLQ 118
L+ WEPSP +A ++ +D L +AN+FE++ SE+AE + + T Q +Q
Sbjct: 126 LSQWEPSPFIHASAEEAADIVLDKTANVFESI-VSESAEEEKVDMSAQQRTNSQ----VQ 180
Query: 119 FLKWPMWLLGPSILLVTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMA 178
LKWP+WLLGPS+LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFNLGATLFLLMA
Sbjct: 181 VLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMA 240
Query: 179 DSCSRPKNPMQDCKSKAPFSYQFWNIVATLTGFVVPLLMMLGSQKG-VSVLQPQLPSISF 237
DSC+RPK+P Q C SK PFSY+FWN+ + + GF+VP+L++ GSQ G ++ LQPQ+P +S
Sbjct: 241 DSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSS 300
Query: 238 AVXXXXXXXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQLMRGLKLGVELSAPAWI 297
AV +VQ LTE+LTWHWQSPVWLVTPV+YE+YR+LQLMRGL L E++AP W+
Sbjct: 301 AVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWV 360
Query: 298 MHSIRGLVCWWVLILGLQLMRVAWFAGLTARARKQQQSSSDTS 340
+H +RGLV WWVLILG+QLMRVAWFAG +R QQ S S
Sbjct: 361 VHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQSVAS 403
>AT3G60590.2 | Symbols: | unknown protein; LOCATED IN: chloroplast,
chloroplast inner membrane, chloroplast envelope;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr3:22398764-22399753 FORWARD LENGTH=329
Length = 329
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/343 (54%), Positives = 242/343 (70%), Gaps = 19/343 (5%)
Query: 1 MSRGMASLTQTHYPINTSTLRRAHPRSQKLLKSGKL-FQLQGLSFPSIHINQSRVCCT-K 58
+S+GM SLT++ + T +R +P + LK+G F+ + L RV CT K
Sbjct: 2 VSQGMVSLTKSLCTM-TPRVRLKNPNMLQKLKTGSCNFRFRNL----------RVLCTPK 50
Query: 59 LTPWEPSPVTYAPTDKQSDNFLQNSANIFETLDSSETAESPTANAEGLKETKYQPGLQLQ 118
L+ WEPSP +A ++ +D L +AN+FE++ SE+AE + + T Q +Q
Sbjct: 51 LSQWEPSPFIHASAEEAADIVLDKTANVFESI-VSESAEEEKVDMSAQQRTNSQ----VQ 105
Query: 119 FLKWPMWLLGPSILLVTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMA 178
LKWP+WLLGPS+LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFNLGATLFLLMA
Sbjct: 106 VLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFLLMA 165
Query: 179 DSCSRPKNPMQDCKSKAPFSYQFWNIVATLTGFVVPLLMMLGSQKG-VSVLQPQLPSISF 237
DSC+RPK+P Q C SK PFSY+FWN+ + + GF+VP+L++ GSQ G ++ LQPQ+P +S
Sbjct: 166 DSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSS 225
Query: 238 AVXXXXXXXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQLMRGLKLGVELSAPAWI 297
AV +VQ LTE+LTWHWQSPVWLVTPV+YE+YR+LQLMRGL L E++AP W+
Sbjct: 226 AVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWV 285
Query: 298 MHSIRGLVCWWVLILGLQLMRVAWFAGLTARARKQQQSSSDTS 340
+H +RGLV WWVLILG+QLMRVAWFAG +R QQ S S
Sbjct: 286 VHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQSVAS 328
>AT3G60590.4 | Symbols: | unknown protein; LOCATED IN: chloroplast
inner membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G48460.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr3:22399043-22399753 FORWARD LENGTH=236
Length = 236
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 149/226 (65%), Positives = 182/226 (80%), Gaps = 1/226 (0%)
Query: 116 QLQFLKWPMWLLGPSILLVTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFL 175
Q+Q LKWP+WLLGPS+LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFNLGATLFL
Sbjct: 10 QVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFL 69
Query: 176 LMADSCSRPKNPMQDCKSKAPFSYQFWNIVATLTGFVVPLLMMLGSQKG-VSVLQPQLPS 234
LMADSC+RPK+P Q C SK PFSY+FWN+ + + GF+VP+L++ GSQ G ++ LQPQ+P
Sbjct: 70 LMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPF 129
Query: 235 ISFAVXXXXXXXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQLMRGLKLGVELSAP 294
+S AV +VQ LTE+LTWHWQSPVWLVTPV+YE+YR+LQLMRGL L E++AP
Sbjct: 130 LSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAP 189
Query: 295 AWIMHSIRGLVCWWVLILGLQLMRVAWFAGLTARARKQQQSSSDTS 340
W++H +RGLV WWVLILG+QLMRVAWFAG +R QQ S S
Sbjct: 190 VWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQSVAS 235
>AT3G60590.1 | Symbols: | unknown protein; LOCATED IN: chloroplast,
chloroplast inner membrane, chloroplast envelope;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48460.1); Has 81 Blast
hits to 81 proteins in 19 species: Archae - 0; Bacteria
- 10; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0;
Other Eukaryotes - 1 (source: NCBI BLink). |
chr3:22399043-22399753 FORWARD LENGTH=236
Length = 236
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 149/226 (65%), Positives = 182/226 (80%), Gaps = 1/226 (0%)
Query: 116 QLQFLKWPMWLLGPSILLVTGMVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFL 175
Q+Q LKWP+WLLGPS+LL +GM PTLWLP+SS+FLG N+ SLLSLIGLDCIFNLGATLFL
Sbjct: 10 QVQVLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNLGATLFL 69
Query: 176 LMADSCSRPKNPMQDCKSKAPFSYQFWNIVATLTGFVVPLLMMLGSQKG-VSVLQPQLPS 234
LMADSC+RPK+P Q C SK PFSY+FWN+ + + GF+VP+L++ GSQ G ++ LQPQ+P
Sbjct: 70 LMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPF 129
Query: 235 ISFAVXXXXXXXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQLMRGLKLGVELSAP 294
+S AV +VQ LTE+LTWHWQSPVWLVTPV+YE+YR+LQLMRGL L E++AP
Sbjct: 130 LSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAP 189
Query: 295 AWIMHSIRGLVCWWVLILGLQLMRVAWFAGLTARARKQQQSSSDTS 340
W++H +RGLV WWVLILG+QLMRVAWFAG +R QQ S S
Sbjct: 190 VWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQPQSVAS 235
>AT1G48460.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
envelope; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G63040.1);
Has 60 Blast hits to 60 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:17911469-17913149 FORWARD LENGTH=340
Length = 340
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 23/243 (9%)
Query: 48 HINQSRVCCTKLTPWEPSPVTYAPTDKQSDNFLQNSANIFETLDSSETAESPTANAEGLK 107
+++ RV C+ S P KQSD A +F S + T ++
Sbjct: 53 QLSRVRVACSS------SQSDSRPEKKQSDKSNYARAELFRGKSGSVSFNGLTHQL--VE 104
Query: 108 ETKYQPGLQLQFLKWPMWLLGPSILLVTGMVPTLWLP--ISSIFLGPNIASLLSLIGLDC 165
E+K + +W+L P +L+ + ++P +L I + F +A +++ +
Sbjct: 105 ESKLVSAPFQEEKGSFLWVLAPVVLISSLILPQFFLSGIIEATFKNDTVAEIVTSFCFET 164
Query: 166 IFNLGATLFLLMADSCSRPKNPMQDCKSKAPFSYQFWNIVATLTGFVVPLLMMLGSQKGV 225
+F G +FL + D RP FS + W ++ L G++ + +G + V
Sbjct: 165 VFYAGLAIFLSVTDRVQRPY---------LDFSSKRWGLITGLRGYLTSAFLTMGLKVVV 215
Query: 226 SVLQPQLP----SISFAVXXXXXXXXXSVQILTEMLTWHWQSPVWLVTPVIYESYRVLQL 281
V + I + +VQ + E S W + P+++E YR+ Q+
Sbjct: 216 PVFAVYMTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQV 275
Query: 282 MRG 284
R
Sbjct: 276 TRA 278