Miyakogusa Predicted Gene

Lj3g3v1440200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1440200.1 Non Chatacterized Hit- tr|B9RD63|B9RD63_RICCO
Nucleotidyltransferase, putative OS=Ricinus communis
G,56.79,2e-16,seg,NULL,NODE_92659_length_1493_cov_9.399866.path2.1
         (289 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00060.1 | Symbols: MEE44 | Nucleotidyltransferase family pro...   155   3e-38

>AT4G00060.1 | Symbols: MEE44 | Nucleotidyltransferase family
           protein | chr4:21437-27996 FORWARD LENGTH=1481
          Length = 1481

 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 117/190 (61%), Gaps = 13/190 (6%)

Query: 1   MRLAWLNSSGGRKRGVKLKEKLNAAGISANVYWRKKGCVDWWANLDAVTSKKVFTTIIMK 60
           MRLAWLN++ G++RG+KLKEKLNAA  +AN YWRKK CVDWW NLDA T KK++T +  K
Sbjct: 223 MRLAWLNTNSGKRRGIKLKEKLNAAAAAANSYWRKKACVDWWQNLDAATHKKIWTCLFGK 282

Query: 61  AAKSLTSEVLEVAGSASKDEIWLHSTGAEKLLDYYRPASAQRTIPTFPDDTELGTVITPV 120
           +AKS+  E+L  A  A + E+WL +  +       R      +  +F D      ++ P 
Sbjct: 283 SAKSVIYEILREANQAQQGEMWLFNFASA------RKGRTDTSAVSFCD-----MILEPN 331

Query: 121 TFCTKPAAIARAFNSLFVLLDVKMMLTSTSSHNSEYDIGKLFFSSLGSVCTISDCILRKM 180
           +   KP  +A   + L+VL +   +L      N    +  +FFSS+G++ T+ DCILRK+
Sbjct: 332 SVPRKPITVASNLSGLYVLQEFASLLILC--QNGLVPVHSVFFSSMGTITTLVDCILRKL 389

Query: 181 RGFLMVISLD 190
           RGFLMVIS+D
Sbjct: 390 RGFLMVISID 399