Miyakogusa Predicted Gene

Lj3g3v1440180.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1440180.3 Non Chatacterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,53.06,3e-17,Likely ribonuclease with RNase H
fold.,YqgF/RNase H-like domain; RNAse_H_YqgF: RNAse H domain
protei,CUFF.42649.3
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12244.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   245   1e-65

>AT1G12244.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:4157719-4158893
           FORWARD LENGTH=254
          Length = 254

 Score =  245 bits (626), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 157/183 (85%)

Query: 50  SLDELPPNALRRKSDPQWRGGFTLGVDLGMARTGIAISKGFNFRPVTVLELRGQKLEVQM 109
           S+DE+PPNA+RRK D  WRGGF+LGVDLG++RTGIAISKG+  +P+TVL+ RGQKLE ++
Sbjct: 61  SIDEIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRL 120

Query: 110 INIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTE 169
           + IAE+EEADEF+IGLPRS DGKET QSN +R+VAGRLAI+AAERGWRVY+ DEHGTT+E
Sbjct: 121 LEIAEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSE 180

Query: 170 AVDRMVNMGLSKSSQQRKLDAYAAMMVLERYFSTSGKDTELVLPKNLELQGKLRKGPPKD 229
           A DRM+ MGLSKS +Q + DAYAA+++LERYFST G   E++LPK+LELQ K++ G P D
Sbjct: 181 ASDRMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVD 240

Query: 230 NDF 232
            DF
Sbjct: 241 PDF 243