Miyakogusa Predicted Gene

Lj3g3v1428130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1428130.1 tr|A9SYE5|A9SYE5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231705,34.07,2e-16,coiled-coil,NULL,CUFF.42635.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45060.1 | Symbols:  | Uncharacterised conserved protein UCP0...   164   2e-41
AT4G26410.1 | Symbols:  | Uncharacterised conserved protein UCP0...    64   5e-11

>AT2G45060.1 | Symbols:  | Uncharacterised conserved protein
           UCP022280 | chr2:18584674-18586688 REVERSE LENGTH=272
          Length = 272

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 111/159 (69%), Gaps = 4/159 (2%)

Query: 14  PPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDASKSRFSQIRSTSS 73
           PP     +TT    T++    +ID A+ QAL+YQK   + V+S IDASK+R SQIR TS 
Sbjct: 28  PPEYQKIATT----TVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSV 83

Query: 74  AHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAAATGLMVFKRPRRI 133
           AH  QT+ +L D  S+YN YE ++FGKIK+GV VA+SHP+I+   A   G+   K+ RR 
Sbjct: 84  AHTSQTIDSLRDIASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRF 143

Query: 134 LYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEK 172
           +YYNT+R+F++EE L+SRA  +VKELR+S+D LKAE EK
Sbjct: 144 VYYNTVRMFVSEEALLSRADLKVKELRQSMDRLKAESEK 182


>AT4G26410.1 | Symbols:  | Uncharacterised conserved protein
           UCP022280 | chr4:13346760-13348791 FORWARD LENGTH=263
          Length = 263

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 12/130 (9%)

Query: 47  QKAFNDAVESAIDASKSRFSQIRSTSSAHFQQTLYALDDF----KSQYNAYEDLLFGKIK 102
           Q+   ++ ++A+ +++S    +R  S++ F+    ++ DF     +QY  YE+  F K+ 
Sbjct: 52  QRTVKESKDTAMRSARS----LRENSTSQFR----SIQDFIPHALTQYKTYENAFFSKVT 103

Query: 103 EGVLVASSHPVITCGAAAATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKS 162
           + ++ A  HP    G   A  L++ + PRR L+ NT+  F +EE    +A   V+EL  S
Sbjct: 104 DELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKHVQELNMS 163

Query: 163 IDLLKAEGEK 172
           +DL+K E  K
Sbjct: 164 VDLMKKESRK 173