Miyakogusa Predicted Gene

Lj3g3v1425010.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1425010.3 tr|G7LDZ6|G7LDZ6_MEDTR F-box/FBD/LRR-repeat
protein OS=Medicago truncatula GN=MTR_8g077460 PE=4
SV=1,39.46,1e-17,FBD,FBD; domain in FBox and BRCT domain containing
pl,FBD,CUFF.42627.3
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56420.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    54   7e-08
AT5G56420.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    54   7e-08
AT5G53840.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    51   4e-07
AT1G78750.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    47   7e-06

>AT5G56420.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22850863-22852334
           REVERSE LENGTH=422
          Length = 422

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 19/166 (11%)

Query: 4   KLLHALSGVKHLVLGCSTTKNMIRAPTLDIPKFRYLHELELVL--PHFNMSFVVKILEKC 61
           KLL +++ VK L L   T+     A T+    F  L  LEL    P +    + +++E  
Sbjct: 266 KLLGSITSVKRLALCLITSDAAYPAGTI----FSQLVHLELCTCAPRW-WDLLTRLIEDS 320

Query: 62  HMLRLLTIENNN---EPS---KWGKP--PRAPIFHHVLHLTFIHYKGYQGFTDELEFLAY 113
             LR+L +   +    PS    W +P  P+  +FH    L    ++ Y+G   + E   +
Sbjct: 321 PKLRVLKLRQKHIRRAPSPRASWKQPALPKCLLFH----LETFKWELYEGSQKQKEVATF 376

Query: 114 VLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKFD 159
           +L+  I L+  IIS      + +K+++LK+L + PR SS CE+ FD
Sbjct: 377 ILKHAIRLKTAIISPKPTSTLLEKHEMLKDLSSSPRGSSTCELLFD 422


>AT5G56420.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22850863-22852334
           REVERSE LENGTH=422
          Length = 422

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 19/166 (11%)

Query: 4   KLLHALSGVKHLVLGCSTTKNMIRAPTLDIPKFRYLHELELVL--PHFNMSFVVKILEKC 61
           KLL +++ VK L L   T+     A T+    F  L  LEL    P +    + +++E  
Sbjct: 266 KLLGSITSVKRLALCLITSDAAYPAGTI----FSQLVHLELCTCAPRW-WDLLTRLIEDS 320

Query: 62  HMLRLLTIENNN---EPS---KWGKP--PRAPIFHHVLHLTFIHYKGYQGFTDELEFLAY 113
             LR+L +   +    PS    W +P  P+  +FH    L    ++ Y+G   + E   +
Sbjct: 321 PKLRVLKLRQKHIRRAPSPRASWKQPALPKCLLFH----LETFKWELYEGSQKQKEVATF 376

Query: 114 VLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKFD 159
           +L+  I L+  IIS      + +K+++LK+L + PR SS CE+ FD
Sbjct: 377 ILKHAIRLKTAIISPKPTSTLLEKHEMLKDLSSSPRGSSTCELLFD 422


>AT5G53840.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:21859148-21860672
           REVERSE LENGTH=444
          Length = 444

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 10/164 (6%)

Query: 1   MFRKLLHALSGVKHLVLGCSTTKNMIRAPTLD-IPKFRYLHELELVLPHFNMSFVVKILE 59
           M R     +S V+ LV+   T K++     L+ + +F YL EL  V    N+  ++ +L+
Sbjct: 276 MTRDFFTTISRVRSLVIRHGTIKDIFHYMELEPLQQFCYLSELSAVCSISNLEMLLNLLK 335

Query: 60  KCH-----MLRLLTIENNNEPSKWGKPPRAPIFHHVLHLTFIHYKGYQ-GFTDELEFLAY 113
            C       L+L+  E N +          P    V  L F+  +    G   EL+   Y
Sbjct: 336 SCPKLESLSLKLVDYEKNKKEEVMSSTVPPPCL--VSSLKFVKLESQLLGCGTELKVARY 393

Query: 114 VLREGIVLERMIISTD-RFLDIQQKNKVLKNLLALPRCSSMCEI 156
            L    +LE++ +  D  + D    N + + L A+PRCSS CE+
Sbjct: 394 FLENSTILEKLTLKIDYMYKDEANVNHIRQTLHAVPRCSSTCEV 437


>AT1G78750.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:29613122-29614695 REVERSE LENGTH=458
          Length = 458

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 1   MFRKLLHALSGVKHLVLGCSTTKNMIRAPTLD-IPKFRYLHELELVLPHFNMSFVVKILE 59
           M R  L  +S +K L++  ST + +      + +P FR L  L +    +    +   LE
Sbjct: 299 MIRDFLVGISSIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSLRVDFYGYKWEMLPIFLE 358

Query: 60  KCHMLRLLTIENNNEPSKWG----KPPRAPIFHHVLHLTFIHYKGYQGFTDELEFLAYVL 115
            C  L+ L + + N   K G      PR   F   L    I  +  +G   E++ ++Y+L
Sbjct: 359 SCPNLKSLVVGSANYREKEGINILSVPRG--FLSSLEYVKIE-RPLKGEAMEMKLVSYLL 415

Query: 116 REGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEI 156
               +L+++ +  D  +  ++++ +LK L  +PR SS C++
Sbjct: 416 ENSTILKKLTLCLDDSIK-KEESVILKELNTIPRLSSACQV 455