Miyakogusa Predicted Gene

Lj3g3v1425010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1425010.1 Non Chatacterized Hit- tr|I3ST10|I3ST10_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,43.62,0.0000000000005,domain in FBox and BRCT domain containing
pl,FBD; FBD,FBD,CUFF.42627.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56420.2 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    45   8e-06
AT5G56420.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    45   8e-06

>AT5G56420.2 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22850863-22852334
           REVERSE LENGTH=422
          Length = 422

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 4   SKWGKP--PRAPIFHHVLHLTFIHYKGYQGFTDELEFLAYVLREGIVLERMIISTDRFLD 61
           + W +P  P+  +FH    L    ++ Y+G   + E   ++L+  I L+  IIS      
Sbjct: 341 ASWKQPALPKCLLFH----LETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTST 396

Query: 62  IQQKNKVLKNLLALPRCSSMCEIKFD 87
           + +K+++LK+L + PR SS CE+ FD
Sbjct: 397 LLEKHEMLKDLSSSPRGSSTCELLFD 422


>AT5G56420.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22850863-22852334
           REVERSE LENGTH=422
          Length = 422

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 4   SKWGKP--PRAPIFHHVLHLTFIHYKGYQGFTDELEFLAYVLREGIVLERMIISTDRFLD 61
           + W +P  P+  +FH    L    ++ Y+G   + E   ++L+  I L+  IIS      
Sbjct: 341 ASWKQPALPKCLLFH----LETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTST 396

Query: 62  IQQKNKVLKNLLALPRCSSMCEIKFD 87
           + +K+++LK+L + PR SS CE+ FD
Sbjct: 397 LLEKHEMLKDLSSSPRGSSTCELLFD 422