Miyakogusa Predicted Gene

Lj3g3v1411740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1411740.1 tr|Q6JAD5|Q6JAD5_MAIZE TATA sequence-binding
protein 1 (TBP-1) OS=Zea mays GN=Z477F24.5 PE=3
SV=1,31.96,0.0000000009,TATA-box binding protein-like,NULL; no
description,Beta2-adaptin/TBP, C-terminal domain;
TATA_bind_p,CUFF.42607.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55520.2 | Symbols: TBP2, ATTBP2 | TATA binding protein 2 | c...   383   e-107
AT1G55520.1 | Symbols: TBP2, ATTBP2 | TATA binding protein 2 | c...   383   e-107
AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 | ...   380   e-106
AT3G13445.2 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 | ...   341   2e-94

>AT1G55520.2 | Symbols: TBP2, ATTBP2 | TATA binding protein 2 |
           chr1:20726150-20727483 REVERSE LENGTH=200
          Length = 200

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/200 (93%), Positives = 190/200 (95%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQG EGSQPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKRFAAV
Sbjct: 1   MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+R+E
Sbjct: 121 SCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVL EFRK QQ
Sbjct: 181 TYTAFENIYPVLREFRKVQQ 200


>AT1G55520.1 | Symbols: TBP2, ATTBP2 | TATA binding protein 2 |
           chr1:20726150-20727483 REVERSE LENGTH=200
          Length = 200

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/200 (93%), Positives = 190/200 (95%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           MADQG EGSQPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKRFAAV
Sbjct: 1   MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSE  SKLAARKYARI+QKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+R+E
Sbjct: 121 SCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TYTAFENIYPVL EFRK QQ
Sbjct: 181 TYTAFENIYPVLREFRKVQQ 200


>AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 |
           chr3:4380317-4381869 FORWARD LENGTH=200
          Length = 200

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/200 (92%), Positives = 189/200 (94%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           M DQGLEGS PVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKRFAAV
Sbjct: 1   MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE 180
           SCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAK+RDE
Sbjct: 121 SCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDE 180

Query: 181 TYTAFENIYPVLTEFRKNQQ 200
           TY AFENIYPVL+EFRK QQ
Sbjct: 181 TYKAFENIYPVLSEFRKIQQ 200


>AT3G13445.2 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 |
           chr3:4380317-4381651 FORWARD LENGTH=196
          Length = 196

 Score =  341 bits (874), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/177 (93%), Positives = 168/177 (94%)

Query: 1   MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAV 60
           M DQGLEGS PVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKRFAAV
Sbjct: 1   MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV 60

Query: 61  IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFNAKFKDFKIQNIVG 120
           IMRIREPKTTALIFASGKMVCTGAKSE  SK+AARKYARI+QKLGF AKFKDFKIQNIVG
Sbjct: 61  IMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVG 120

Query: 121 SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKV 177
           SCDVKFPIRLEGLAYSH AFSSYEPELFPGLIYRMK PKIVLLIFVSGKIV+TGAKV
Sbjct: 121 SCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKV 177



 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 115 IQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTG 174
           +QNIV + ++   + L+ +A      + Y P+ F  +I R+++PK   LIF SGK+V TG
Sbjct: 25  LQNIVSTVNLDCKLDLKAIAL-QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG 83

Query: 175 AKVRD 179
           AK  D
Sbjct: 84  AKSED 88