Miyakogusa Predicted Gene

Lj3g3v1410710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1410710.1 tr|D9ZJB3|D9ZJB3_MALDO SCL domain class
transcription factor OS=Malus domestica GN=SCL23 PE=2 SV=1,75,0.0002,
,CUFF.42601.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41920.1 | Symbols:  | GRAS family transcription factor | chr...    47   2e-06

>AT5G41920.1 | Symbols:  | GRAS family transcription factor |
           chr5:16779982-16781199 FORWARD LENGTH=405
          Length = 405

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 2/32 (6%)

Query: 1   MQELQWPPPGLFHILASRARKIRSLRITEFGC 32
           MQ LQWP   LFHILASR RK+RS+RIT FG 
Sbjct: 160 MQGLQWP--ALFHILASRPRKLRSIRITGFGS 189