Miyakogusa Predicted Gene

Lj3g3v1409680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1409680.1 Non Chatacterized Hit- tr|B8A0Y3|B8A0Y3_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,35.89,1e-17,seg,NULL;
coiled-coil,NULL,NODE_28991_length_879_cov_25.144482.path2.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53050.1 | Symbols:  | Protein kinase superfamily protein | c...   173   9e-44
AT1G57700.1 | Symbols:  | Protein kinase superfamily protein | c...    55   4e-08

>AT1G53050.1 | Symbols:  | Protein kinase superfamily protein |
           chr1:19772574-19775531 FORWARD LENGTH=694
          Length = 694

 Score =  173 bits (438), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/197 (51%), Positives = 125/197 (63%), Gaps = 35/197 (17%)

Query: 1   MQKRQGKTYSQSRSEKFNPHPEEVASGFPIDPPRPS-QAVEVSRDSQ--VHQHKRASHSG 57
           MQKRQ ++ ++SRSEKFNPHPEEVASGFPIDPPRPS QA E +R+SQ  +  HKRASHSG
Sbjct: 485 MQKRQSQSTNRSRSEKFNPHPEEVASGFPIDPPRPSSQAFEPNRESQGNIIPHKRASHSG 544

Query: 58  PLNHRNVAPK----------ISMGGDLPTSSGLVASRRSMLSDNRGETSGLSQAEAPKLI 107
           PL+ R+ + K          +S   D     G  A+R           +G  Q E  + +
Sbjct: 545 PLSRRSASAKGRRNYQDSQKVSSIADYSAMPGFAATR-----------TGAPQQETCRGM 593

Query: 108 TWFPGSFKDASEPLTRQDQKHHGHAPQKEEGRCSNQDPNLVGYGSKGYKIHYSGPLLVPS 167
           T  PGSFK+ SE            A Q+E GR + +DP L+GYGSKG+KIHYSGPL+VPS
Sbjct: 594 TRLPGSFKETSE-----------EANQEENGRSNKKDPILLGYGSKGHKIHYSGPLVVPS 642

Query: 168 SNTDQMLKDHDRQIQEA 184
            N DQ+LKDHDR IQEA
Sbjct: 643 GNMDQVLKDHDRHIQEA 659


>AT1G57700.1 | Symbols:  | Protein kinase superfamily protein |
           chr1:21371051-21373860 FORWARD LENGTH=692
          Length = 692

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 35/195 (17%)

Query: 1   MQKRQGKTYSQSRSEKFNPHPEEVASGFPIDPPRPSQAVEVSRDSQVHQHKRASHSGPLN 60
           +QKR G+T   S SEKFNP  +   +GF I+P + + A                      
Sbjct: 496 IQKRLGETNRTSISEKFNPEGDS-GNGFRIEPLKGNTA---------------------- 532

Query: 61  HRNVAPKISMGGDLPTSSGLVASRRSMLSDNRGETSGLSQAEAPKLITWFPGSFKDA--- 117
            +N  P  + G + P  S  + ++RS +    G+ S  S + AP       GS +DA   
Sbjct: 533 -QNPYPIYTNGDNHPNGSSQLRTQRSYVQRGSGQLSRFSNSMAPTRDGSQFGSMRDAIVN 591

Query: 118 -------SEPLTRQDQKHHGHAPQKEEGRCSNQDPNLVGY-GSKGYKIHYSGPLLVPSSN 169
                  SE      +        +++   S+   +++GY G K  +I YSGPL+    N
Sbjct: 592 QRWLEDGSENFNLSQRLLEKPNGIRKDDPSSSSKESIMGYDGEKRGRIQYSGPLIPGEGN 651

Query: 170 TDQMLKDHDRQIQEA 184
            D+MLK+H+RQI  A
Sbjct: 652 LDEMLKEHERQILLA 666