Miyakogusa Predicted Gene

Lj3g3v1403940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1403940.1 tr|K1QEF6|K1QEF6_CRAGI E3 ubiquitin-protein
ligase Hakai OS=Crassostrea gigas PE=4
SV=1,54.55,0.00000003,ZF_RING_1,Zinc finger, RING-type, conserved
site; E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED,NULL,CUFF.42545.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01160.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   189   4e-49

>AT5G01160.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:54280-55727 FORWARD LENGTH=360
          Length = 360

 Score =  189 bits (479), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/112 (76%), Positives = 97/112 (86%)

Query: 1   MLQIRLSKTPASEGSAGVKVSPAETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRR 60
           MLQIRL +   +E   G + SP ETVTVACPDHLVLADLPVAKGIG+ T  +++K +GRR
Sbjct: 1   MLQIRLRRDSPTETGNGARPSPTETVTVACPDHLVLADLPVAKGIGSVTPTTVIKPVGRR 60

Query: 61  SRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQK 112
           SRRQLGERVHFCVRCDFPIAIYGRL PC+HAFCL+CARSDS+CYLCDERIQK
Sbjct: 61  SRRQLGERVHFCVRCDFPIAIYGRLIPCDHAFCLECARSDSICYLCDERIQK 112