Miyakogusa Predicted Gene

Lj3g3v1381530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1381530.1 tr|Q6YYA7|Q6YYA7_ORYSJ Os08g0359600 protein
OS=Oryza sativa subsp. japonica GN=OJ1014_E02.5 PE=3
SV=,77.19,3e-19,40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER,Ribosomal
protein S17; seg,NULL; Nucleic acid-binding protei,CUFF.42516.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49400.1 | Symbols: emb1129 | Nucleic acid-binding, OB-fold-l...   103   5e-23
AT3G18880.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   100   4e-22
AT1G79850.1 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S...    48   2e-06

>AT1G49400.1 | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like
           protein | chr1:18283156-18283643 FORWARD LENGTH=116
          Length = 116

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 54/59 (91%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVP 153
           F +K+YNRYVKRTSKFMAHD+ + CNIGDRV+L+PSRPLSKNK W+VAEI+KKARIY P
Sbjct: 25  FHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPSRPLSKNKHWIVAEIIKKARIYSP 83


>AT3G18880.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr3:6509588-6510069 FORWARD LENGTH=105
          Length = 105

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 53/59 (89%)

Query: 95  FDHKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKARIYVP 153
           F + +YNRYVKRTSKFMAHDE + CNIGDRV+L+PSRPLSK+K W+V+EI+KKARIY P
Sbjct: 25  FHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPSRPLSKHKHWIVSEIIKKARIYSP 83


>AT1G79850.1 | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S17
           | chr1:30041473-30041922 REVERSE LENGTH=149
          Length = 149

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 97  HKVYNRYVKRTSKFMAHDENNLCNIGDRVRLNPSRPLSKNKCWVVAEILKKA 148
           H  Y R V+   K+ AHD +N   +GD VRL  SRP+SK K +V   ++ +A
Sbjct: 76  HPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARA 127