Miyakogusa Predicted Gene

Lj3g3v1378290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1378290.1 Non Chatacterized Hit- tr|I1L239|I1L239_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,29.93,0.00000000002,APO,APO domain; APO_RNA-bind,APO domain; APO4
(ACCUMULATION OF PHOTOSYSTEM ONE 4),NULL; EUKARYOTIC
T,NODE_65675_length_1665_cov_11.205405.path2.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of un...   326   2e-89
AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of un...   187   1e-47
AT5G57930.1 | Symbols: APO2, emb1629 | Arabidopsis thaliana prot...   187   1e-47
AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of un...   179   3e-45
AT1G64810.1 | Symbols: APO1 | Arabidopsis thaliana protein of un...   179   3e-45
AT5G61930.2 | Symbols: APO3 | Arabidopsis thaliana protein of un...   169   3e-42
AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of un...   169   3e-42

>AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr3:7662542-7663638 REVERSE
           LENGTH=337
          Length = 337

 Score =  326 bits (835), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/300 (52%), Positives = 208/300 (69%), Gaps = 2/300 (0%)

Query: 31  DLRKFHPLILEKIEKRSQAYPVGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPE 90
           DLRK  P+IL++IE R++ YPV  +VPVA+E+L++R  LI  ++ L+  FP + CKFC E
Sbjct: 34  DLRKLRPMILKRIENRAKDYPVKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSE 93

Query: 91  IYIGEQGHLIQTCWGYRHRATNRVHEWVKGCLNDIVVPVETFQLKNMFQGV-SHNQRFDS 149
           +++G++GHLI+TC  Y  R  NR+HEWV G +NDI+VPVE++ L N+ QGV  H +RFD 
Sbjct: 94  VFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDY 153

Query: 150 DRIPAVVELCWQAGADPDDKNLCPSKWNLEAANGGVDGTESLSPNDLASIANNTLRAWET 209
           DR+PA++ELC QAGA   ++ L  S+ + +      +   SL   DL  +  N L AWE 
Sbjct: 154 DRVPAILELCCQAGAIHPEEILQYSEIH-DNPQISEEDIRSLPAGDLKYVGANALMAWEK 212

Query: 210 LRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIKANVDHLVPP 269
           +R+GV KLL VY  KVCK C EVHVGPS HKARL GVFK ESW+G H+W KA V+ LVP 
Sbjct: 213 VRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGVNDLVPE 272

Query: 270 KIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMKEQGLPGPANNKI 329
           K+VW RRPQDP VL++EGR +YG  PAI+ LC+  GAIVP +Y   MK QGL     N +
Sbjct: 273 KMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMKPQGLSFSFTNPV 332


>AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr5:23454690-23456354
           FORWARD LENGTH=443
          Length = 443

 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 30/302 (9%)

Query: 52  VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
           V ++VP+A +V  +R  LI+ +  L+      AC +C EI++G  GH  ++C G      
Sbjct: 133 VKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQR 192

Query: 112 NRVHEWVKGCLNDIVVPVETFQL-KNMFQGVSHNQRFDSDRIPAVVELCWQAGAD----P 166
             +HEW    + D++VP+E + L   + + + H++RF   R+PAVVELC Q G +    P
Sbjct: 193 KGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFP 252

Query: 167 DDKNLCPSKWNLEAANGGVDGTESL------------------------SPNDLASIANN 202
             +   P     ++     D TE                          S  +  S+A  
Sbjct: 253 AKRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEE 312

Query: 203 TLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIKAN 262
           TL+AWE +R+G  KL+ +Y V+VC +C EVHVGP+ HKA+  G FK +   G H W  A 
Sbjct: 313 TLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAV 372

Query: 263 VDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK-EQGL 321
           +D L+PP+ VW     + P +  E R FYG+ PA++++CA+AGA+VP  Y   M+ E G+
Sbjct: 373 LDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGI 432

Query: 322 PG 323
           P 
Sbjct: 433 PS 434


>AT5G57930.1 | Symbols: APO2, emb1629 | Arabidopsis thaliana protein
           of unknown function (DUF794) | chr5:23454690-23456354
           FORWARD LENGTH=440
          Length = 440

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 30/302 (9%)

Query: 52  VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
           V ++VP+A +V  +R  LI+ +  L+      AC +C EI++G  GH  ++C G      
Sbjct: 130 VKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQR 189

Query: 112 NRVHEWVKGCLNDIVVPVETFQL-KNMFQGVSHNQRFDSDRIPAVVELCWQAGAD----P 166
             +HEW    + D++VP+E + L   + + + H++RF   R+PAVVELC Q G +    P
Sbjct: 190 KGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFP 249

Query: 167 DDKNLCPSKWNLEAANGGVDGTESL------------------------SPNDLASIANN 202
             +   P     ++     D TE                          S  +  S+A  
Sbjct: 250 AKRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEE 309

Query: 203 TLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFWIKAN 262
           TL+AWE +R+G  KL+ +Y V+VC +C EVHVGP+ HKA+  G FK +   G H W  A 
Sbjct: 310 TLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAV 369

Query: 263 VDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK-EQGL 321
           +D L+PP+ VW     + P +  E R FYG+ PA++++CA+AGA+VP  Y   M+ E G+
Sbjct: 370 LDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGI 429

Query: 322 PG 323
           P 
Sbjct: 430 PS 431


>AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr1:24086810-24088276
           FORWARD LENGTH=460
          Length = 460

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 150/299 (50%), Gaps = 33/299 (11%)

Query: 52  VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
           V  +VPVA +V+ +  +LI G++ L++  P  AC  C  +++   GH I+ C G  +   
Sbjct: 147 VPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQR 206

Query: 112 NRVHEWVKGCLNDIVVPVETFQLKNMF-QGVSHNQRFDSDRIPAVVELCWQAGAD----- 165
              H WVKG +ND+++PVE++ + + F + + H  RF+ +RIPA+VELC QAG +     
Sbjct: 207 RGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYP 266

Query: 166 ---------------------------PDDKNLCPSKWNLEAANGGVDGTESLSPNDLAS 198
                                      P   +   S        G  +     +P D+  
Sbjct: 267 CRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIPK 326

Query: 199 IANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFW 258
           IA  T+ A+E +R GV KL+  ++VK C +CSEVHVGP  H  +L G FK +   G H W
Sbjct: 327 IAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGW 386

Query: 259 IKANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK 317
             A VD + PP  VW  R      L    R FYG+ PA++++C  +GA VP  Y  MM+
Sbjct: 387 QDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMR 445



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 191 LSPNDLASIANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCE 250
           L PN L  +A+  +  W+ L  G+ +LL V  V  C  C  VHV    H  R        
Sbjct: 146 LVPN-LVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNS 204

Query: 251 SWKGAHFWIKANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVP 309
             +G+H W+K  ++ ++ P   +         + +E R  Y R+PA+++LC +AG  +P
Sbjct: 205 QRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIP 263


>AT1G64810.1 | Symbols: APO1 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr1:24086882-24088276
           FORWARD LENGTH=436
          Length = 436

 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 150/299 (50%), Gaps = 33/299 (11%)

Query: 52  VGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRAT 111
           V  +VPVA +V+ +  +LI G++ L++  P  AC  C  +++   GH I+ C G  +   
Sbjct: 123 VPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQR 182

Query: 112 NRVHEWVKGCLNDIVVPVETFQLKNMF-QGVSHNQRFDSDRIPAVVELCWQAGAD----- 165
              H WVKG +ND+++PVE++ + + F + + H  RF+ +RIPA+VELC QAG +     
Sbjct: 183 RGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYP 242

Query: 166 ---------------------------PDDKNLCPSKWNLEAANGGVDGTESLSPNDLAS 198
                                      P   +   S        G  +     +P D+  
Sbjct: 243 CRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIPK 302

Query: 199 IANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCESWKGAHFW 258
           IA  T+ A+E +R GV KL+  ++VK C +CSEVHVGP  H  +L G FK +   G H W
Sbjct: 303 IAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGW 362

Query: 259 IKANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVPAEYNKMMK 317
             A VD + PP  VW  R      L    R FYG+ PA++++C  +GA VP  Y  MM+
Sbjct: 363 QDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMR 421



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 191 LSPNDLASIANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSDHKARLSGVFKCE 250
           L PN L  +A+  +  W+ L  G+ +LL V  V  C  C  VHV    H  R        
Sbjct: 122 LVPN-LVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNS 180

Query: 251 SWKGAHFWIKANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVP 309
             +G+H W+K  ++ ++ P   +         + +E R  Y R+PA+++LC +AG  +P
Sbjct: 181 QRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIP 239


>AT5G61930.2 | Symbols: APO3 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr5:24866230-24867665
           REVERSE LENGTH=402
          Length = 402

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 163/320 (50%), Gaps = 30/320 (9%)

Query: 26  ATSKVDLRKFHPL-ILEKIEKRSQAYPVGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMA 84
           A  +  LRK  P  +LE  +       V  +V VA  V   RN+L+ G+S +I++ P   
Sbjct: 70  AKEEKQLRKLQPCRVLE--DPPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHR 127

Query: 85  CKFCPEIYIGEQGHLIQTCWGYRHRATNRVHEWVKGCLNDIVVPVETFQL--KNMFQGVS 142
           C+ C E++IG+QGH I+TC G    + +  H W +G ++D+V+  + F L  + +   V 
Sbjct: 128 CRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVI 187

Query: 143 HNQRFDSDRIPAVVELCWQAGAD----PDDKNLCP------SKWNLEAANGG-----VDG 187
           H++RF   +I AV+ELC QAG D    P  +   P         + E  N G     V  
Sbjct: 188 HDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFEDVNDGNSELAVTS 247

Query: 188 TESLSPND---------LASIANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSD 238
           T +L   D         L  ++  T+ +W  +  GV KL+  Y V  C +C E+ VGP  
Sbjct: 248 TTTLIQEDDRCKEEKKSLKELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKG 307

Query: 239 HKARLSGVFKCESWKGAHFWIKANVDHLVPPKIVWR-RRPQDPPVLLNEGRDFYGRVPAI 297
           HK R+    K +   G H W +A +D +V P  VW  R P D  VL N  + FYG+ PA+
Sbjct: 308 HKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAV 367

Query: 298 LDLCAKAGAIVPAEYNKMMK 317
           +++C + GA VP +YN MM+
Sbjct: 368 IEMCVQGGAPVPDQYNSMMR 387


>AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of
           unknown function (DUF794) | chr5:24866230-24867665
           REVERSE LENGTH=402
          Length = 402

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 163/320 (50%), Gaps = 30/320 (9%)

Query: 26  ATSKVDLRKFHPL-ILEKIEKRSQAYPVGTMVPVAKEVLLSRNVLIHGVSTLINYFPFMA 84
           A  +  LRK  P  +LE  +       V  +V VA  V   RN+L+ G+S +I++ P   
Sbjct: 70  AKEEKQLRKLQPCRVLE--DPPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHR 127

Query: 85  CKFCPEIYIGEQGHLIQTCWGYRHRATNRVHEWVKGCLNDIVVPVETFQL--KNMFQGVS 142
           C+ C E++IG+QGH I+TC G    + +  H W +G ++D+V+  + F L  + +   V 
Sbjct: 128 CRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVI 187

Query: 143 HNQRFDSDRIPAVVELCWQAGAD----PDDKNLCP------SKWNLEAANGG-----VDG 187
           H++RF   +I AV+ELC QAG D    P  +   P         + E  N G     V  
Sbjct: 188 HDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFEDVNDGNSELAVTS 247

Query: 188 TESLSPND---------LASIANNTLRAWETLRSGVGKLLSVYSVKVCKHCSEVHVGPSD 238
           T +L   D         L  ++  T+ +W  +  GV KL+  Y V  C +C E+ VGP  
Sbjct: 248 TTTLIQEDDRCKEEKKSLKELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKG 307

Query: 239 HKARLSGVFKCESWKGAHFWIKANVDHLVPPKIVWR-RRPQDPPVLLNEGRDFYGRVPAI 297
           HK R+    K +   G H W +A +D +V P  VW  R P D  VL N  + FYG+ PA+
Sbjct: 308 HKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAV 367

Query: 298 LDLCAKAGAIVPAEYNKMMK 317
           +++C + GA VP +YN MM+
Sbjct: 368 IEMCVQGGAPVPDQYNSMMR 387