Miyakogusa Predicted Gene

Lj3g3v1341620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1341620.1 Non Chatacterized Hit- tr|I3S2F0|I3S2F0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.09,0,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain; helix
loop helix domain,Helix-loop,CUFF.42506.1
         (230 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   179   2e-45
AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (b...   177   4e-45
AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   177   5e-45
AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   149   2e-36
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   148   2e-36
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DN...   135   2e-32
AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    72   4e-13
AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    72   5e-13
AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    69   2e-12
AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    69   3e-12

>AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=226
          Length = 226

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 117/177 (66%), Gaps = 6/177 (3%)

Query: 59  VFESGPSKRLRTESSV-SGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDA 117
           + E    KR++TES   S SKACREK RRD+LN++F ELSS+LEPGR PKTDK AII+DA
Sbjct: 51  IKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDA 110

Query: 118 VRVVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXX----XXXXXXXXXX 173
           +R+V Q R+EA+KLK++N+ LQEKIKELK EKNE+                         
Sbjct: 111 IRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQP 170

Query: 174 XXQPGFLPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
             QP FLP+     + +   S KL+P+  YPG AMWQFMP A +DTS+DH+LRPPVA
Sbjct: 171 QPQPCFLPNPQTLSQAQAPGS-KLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226


>AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr5:22217270-22218993 FORWARD LENGTH=234
          Length = 234

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 120/178 (67%), Gaps = 9/178 (5%)

Query: 61  ESGPSKRLRTESS-VSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVR 119
           E G  KR R ESS  + SKACREK RRD+LN++F+EL +ILEPG  PKTDKAAI+ DAVR
Sbjct: 58  EPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVR 117

Query: 120 VVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXX-XXXXXXXXXXXXXXXXXQPG 178
           +VTQLR EA+KLK+ N+ LQ+KIKELK EKNE+                        QP 
Sbjct: 118 MVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPS 177

Query: 179 F------LPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
           F      +P A A+ +G+ A  +K++P I YPG+AMWQFMP A +DTS+DH+LRPPVA
Sbjct: 178 FFPAPPMMPTAFASAQGQ-APGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234


>AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=292
          Length = 292

 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 116/175 (66%), Gaps = 6/175 (3%)

Query: 61  ESGPSKRLRTESSV-SGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVR 119
           E    KR++TES   S SKACREK RRD+LN++F ELSS+LEPGR PKTDK AII+DA+R
Sbjct: 119 EPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIR 178

Query: 120 VVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXX----XXXXXXXXXXXX 175
           +V Q R+EA+KLK++N+ LQEKIKELK EKNE+                           
Sbjct: 179 MVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQP 238

Query: 176 QPGFLPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
           QP FLP+     + +   S KL+P+  YPG AMWQFMP A +DTS+DH+LRPPVA
Sbjct: 239 QPCFLPNPQTLSQAQAPGS-KLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 292


>AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300418-8301503
           FORWARD LENGTH=277
          Length = 277

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 102/168 (60%), Gaps = 8/168 (4%)

Query: 66  KRLRTESSV--SGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQ 123
           KR RT S     G+KACRE+LRR+KLNERF++LSS+LEPGR PKTDK AI+ DA+R++ Q
Sbjct: 115 KRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQ 174

Query: 124 LRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXXXXXXXXXXXXXX-QPGFLPH 182
           LR+EA KL+E N  L E+IK LKAEKNE+                          GF+PH
Sbjct: 175 LRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPH 234

Query: 183 ADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
             AA        +K+  Y  Y  + MW +MP +V DTSRD  LRPP A
Sbjct: 235 IPAAFN-----HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 277


>AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300077-8301503
           FORWARD LENGTH=283
          Length = 283

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 102/168 (60%), Gaps = 8/168 (4%)

Query: 66  KRLRTESSV--SGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQ 123
           KR RT S     G+KACRE+LRR+KLNERF++LSS+LEPGR PKTDK AI+ DA+R++ Q
Sbjct: 121 KRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQ 180

Query: 124 LRNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXXXXXXXXXXXXXX-QPGFLPH 182
           LR+EA KL+E N  L E+IK LKAEKNE+                          GF+PH
Sbjct: 181 LRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPH 240

Query: 183 ADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA 230
             AA        +K+  Y  Y  + MW +MP +V DTSRD  LRPP A
Sbjct: 241 IPAAFN-----HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283


>AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8283255-8284915
           REVERSE LENGTH=320
          Length = 320

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 102/171 (59%), Gaps = 10/171 (5%)

Query: 66  KRLRTES-SVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQL 124
           KR RT S S  G+KACREKLRR+KLN++F++LSS+LEPGR PKTDK+AI+ DA+RVV QL
Sbjct: 154 KRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQL 213

Query: 125 RNEAEKLKEMNNDLQEKIKELKAEKNEIXXXXXXXXXXXXXXXXXXXXXXX-QPGFLPHA 183
           R EA +L+E N  L E+IK LKA+KNE+                         PGF+P  
Sbjct: 214 RGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQ 273

Query: 184 DAAVKGKGAASHKL---IPYIGY-PGIAMWQFMPSAVLDTSRDHLLRPPVA 230
             A       SHK+    PY  Y P + MW  +P A  DTSRD    PPVA
Sbjct: 274 HPAA----FHSHKMAVAYPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320


>AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6903842-6905863
           FORWARD LENGTH=337
          Length = 337

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 72  SSVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKL 131
           S+    KA REKLRR+KLNE F+EL ++L+P R PK DKA I++D V+++ +L +E  KL
Sbjct: 57  SARKSQKAGREKLRREKLNEHFVELGNVLDPER-PKNDKATILTDTVQLLKELTSEVNKL 115

Query: 132 KEMNNDLQEKIKELKAEKNEI 152
           K     L ++ +EL  EKN++
Sbjct: 116 KSEYTALTDESRELTQEKNDL 136


>AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6904579-6905863
           FORWARD LENGTH=284
          Length = 284

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 72  SSVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKL 131
           S+    KA REKLRR+KLNE F+EL ++L+P R PK DKA I++D V+++ +L +E  KL
Sbjct: 4   SARKSQKAGREKLRREKLNEHFVELGNVLDPER-PKNDKATILTDTVQLLKELTSEVNKL 62

Query: 132 KEMNNDLQEKIKELKAEKNEI 152
           K     L ++ +EL  EKN++
Sbjct: 63  KSEYTALTDESRELTQEKNDL 83


>AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055521-17056567
           FORWARD LENGTH=268
          Length = 268

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 73  SVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLK 132
           +V   KA REKLRRDKL E+FLEL + L+P R PK+DKA++++D ++++  + N+ ++LK
Sbjct: 26  AVCSQKAEREKLRRDKLKEQFLELGNALDPNR-PKSDKASVLTDTIQMLKDVMNQVDRLK 84

Query: 133 EMNNDLQEKIKELKAEKNEI 152
                L ++ +EL  EK+E+
Sbjct: 85  AEYETLSQESRELIQEKSEL 104


>AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055397-17056567
           FORWARD LENGTH=286
          Length = 286

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 73  SVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLK 132
           +V   KA REKLRRDKL E+FLEL + L+P R PK+DKA++++D ++++  + N+ ++LK
Sbjct: 44  AVCSQKAEREKLRRDKLKEQFLELGNALDPNR-PKSDKASVLTDTIQMLKDVMNQVDRLK 102

Query: 133 EMNNDLQEKIKELKAEKNEI 152
                L ++ +EL  EK+E+
Sbjct: 103 AEYETLSQESRELIQEKSEL 122