Miyakogusa Predicted Gene

Lj3g3v1307390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1307390.1 Non Chatacterized Hit- tr|H3F941|H3F941_PRIPA
Uncharacterized protein OS=Pristionchus pacificus GN=W,56.25,3e-19,no
description,Aconitase/3-isopropylmalate dehydratase, swivel;
LeuD/IlvD-like,Aconitase/3-isopropyl,gene.g47166.t1.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05710.1 | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350...   162   4e-41
AT4G35830.2 | Symbols: ACO1 | aconitase 1 | chr4:16973007-169772...   147   1e-36
AT4G35830.1 | Symbols: ACO1 | aconitase 1 | chr4:16973007-169779...   147   1e-36
AT4G26970.1 | Symbols: ACO2 | aconitase 2 | chr4:13543077-135484...   146   2e-36
AT5G54950.1 | Symbols:  | Aconitase family protein | chr5:223098...    92   9e-20

>AT2G05710.1 | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350
           FORWARD LENGTH=990
          Length = 990

 Score =  162 bits (410), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/83 (87%), Positives = 79/83 (95%)

Query: 1   MGIIPLCFKSGEDADTLGLTGHERFSIDLPNNISEIRPGQDVTVRTDSGKSFTCTVRFDT 60
           MGIIPLCFKSGEDADTLGLTGHER++I LP +ISEIRPGQDVTV TD+GKSFTCTVRFDT
Sbjct: 908 MGIIPLCFKSGEDADTLGLTGHERYTIHLPTDISEIRPGQDVTVTTDNGKSFTCTVRFDT 967

Query: 61  EVELEYFNHGGILPYVIRNLTRQ 83
           EVEL YFNHGGILPYVIRNL++Q
Sbjct: 968 EVELAYFNHGGILPYVIRNLSKQ 990


>AT4G35830.2 | Symbols: ACO1 | aconitase 1 | chr4:16973007-16977278
           REVERSE LENGTH=795
          Length = 795

 Score =  147 bits (372), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/83 (78%), Positives = 77/83 (92%)

Query: 1   MGIIPLCFKSGEDADTLGLTGHERFSIDLPNNISEIRPGQDVTVRTDSGKSFTCTVRFDT 60
           MGIIPLCFK+GEDA+TLGLTG E ++I+LPNN+SEI+PGQDVTV T++GKSFTCT+RFDT
Sbjct: 713 MGIIPLCFKAGEDAETLGLTGQELYTIELPNNVSEIKPGQDVTVVTNNGKSFTCTLRFDT 772

Query: 61  EVELEYFNHGGILPYVIRNLTRQ 83
           EVEL YF+HGGIL YVIRNL +Q
Sbjct: 773 EVELAYFDHGGILQYVIRNLIKQ 795


>AT4G35830.1 | Symbols: ACO1 | aconitase 1 | chr4:16973007-16977949
           REVERSE LENGTH=898
          Length = 898

 Score =  147 bits (372), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/83 (78%), Positives = 77/83 (92%)

Query: 1   MGIIPLCFKSGEDADTLGLTGHERFSIDLPNNISEIRPGQDVTVRTDSGKSFTCTVRFDT 60
           MGIIPLCFK+GEDA+TLGLTG E ++I+LPNN+SEI+PGQDVTV T++GKSFTCT+RFDT
Sbjct: 816 MGIIPLCFKAGEDAETLGLTGQELYTIELPNNVSEIKPGQDVTVVTNNGKSFTCTLRFDT 875

Query: 61  EVELEYFNHGGILPYVIRNLTRQ 83
           EVEL YF+HGGIL YVIRNL +Q
Sbjct: 876 EVELAYFDHGGILQYVIRNLIKQ 898


>AT4G26970.1 | Symbols: ACO2 | aconitase 2 | chr4:13543077-13548427
           FORWARD LENGTH=995
          Length = 995

 Score =  146 bits (369), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/81 (77%), Positives = 75/81 (92%)

Query: 1   MGIIPLCFKSGEDADTLGLTGHERFSIDLPNNISEIRPGQDVTVRTDSGKSFTCTVRFDT 60
           MGIIPLCFK+GEDA+TLGLTGHER+++ LP  +S+IRPGQDVTV TDSGKSF CT+RFDT
Sbjct: 913 MGIIPLCFKAGEDAETLGLTGHERYTVHLPTKVSDIRPGQDVTVTTDSGKSFVCTLRFDT 972

Query: 61  EVELEYFNHGGILPYVIRNLT 81
           EVEL Y++HGGILPYVIR+L+
Sbjct: 973 EVELAYYDHGGILPYVIRSLS 993


>AT5G54950.1 | Symbols:  | Aconitase family protein |
          chr5:22309832-22310242 REVERSE LENGTH=74
          Length = 74

 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 52/62 (83%)

Query: 6  LCFKSGEDADTLGLTGHERFSIDLPNNISEIRPGQDVTVRTDSGKSFTCTVRFDTEVELE 65
          + FKSGEDA+TLGLTGHE ++I LP+NI+EI+PGQD+TV TD+ KSF CT+R DTE+ + 
Sbjct: 1  MAFKSGEDAETLGLTGHELYTIHLPSNINEIKPGQDITVTTDTAKSFVCTLRLDTEIWVL 60

Query: 66 YF 67
           F
Sbjct: 61 CF 62