Miyakogusa Predicted Gene
- Lj3g3v1297070.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1297070.1 Non Chatacterized Hit- tr|E1ZHJ8|E1ZHJ8_CHLVA
Putative uncharacterized protein OS=Chlorella variabil,43.14,9e-18,GB
DEF: HYPOTHETICAL PROTEIN AT2G32590,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; Cnd2,Condensin complex,CUFF.42430.1
(678 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32590.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 695 0.0
>AT2G32590.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 17
plant structures; EXPRESSED DURING: 9 growth stages;
CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418);
Has 467 Blast hits to 447 proteins in 202 species:
Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168;
Plants - 39; Viruses - 1; Other Eukaryotes - 108
(source: NCBI BLink). | chr2:13829420-13833209 REVERSE
LENGTH=671
Length = 671
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/674 (54%), Positives = 469/674 (69%), Gaps = 23/674 (3%)
Query: 17 TVSPNPTTAAPSKRLPVAARILSPTSPVFIGSNDDQVEXXXXXXXXXXXXXXKSLAAAAN 76
+++PNP S RI +PTSP F+GSNDD++E +S+ A
Sbjct: 4 SLTPNPKQKPAS----TTTRIQAPTSPFFLGSNDDRLEREQARAARAAASRRRSVIFARG 59
Query: 77 FPSRDPDSDPCLTKDQILDLFHNCIKLAAENKINQKNTWELKLIDHLTDFIRTEEESDVE 136
+ +SDPC K QIL+LF NCIKLA+ENKINQKNTWEL LIDHL + I+ E+E++ E
Sbjct: 60 -SQPETESDPCFDKQQILELFQNCIKLASENKINQKNTWELNLIDHLCEIIKVEDENNTE 118
Query: 137 TNFQIASCTLEAGVKIYSLRVDSVHSEAYKVLARMNRVGQEAEEDSTLDSVNAEDGHEES 196
TNFQ ASCTLEAGVKIYS+RVDSVHSEAYKVL + R G + D D+ A +
Sbjct: 119 TNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDGGDHE-DAAGAVENATNQ 177
Query: 197 KKGIDKKLSPLSTLESSFEALNVKKFDVAFAVDPLYRHTSAQFDEGGAKGLLMNNLGVYG 256
KK +KK+SPLSTLE SF+ALNVKKFDVAFAVDPLY TSAQFDEGGAKGLL+NNLGVYG
Sbjct: 178 KKQPEKKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYG 237
Query: 257 GCRVLFDSLEVPGKCIASQSEQDISDTIDLSFLRDCIEEMLLNMRMKDEISPTLRVIVNQ 316
GC+VLFDS E+PGK ++S ++ D S+TIDLSF+++C+E+M+LNMR KDEI P+LR I+NQ
Sbjct: 238 GCQVLFDSQEIPGKLVSSANKHDKSETIDLSFVKECVEQMVLNMRKKDEIVPSLRAIINQ 297
Query: 317 FDENNRRPSDFEFSGQKSAEEFGVDI--DCSIAAERGEYENFPSWCNDHDNQTFVAEQ-- 372
FDE N+RPSD GQ++ E F + D S A + YENF + D++ Q+ ++
Sbjct: 298 FDEENQRPSDTFSCGQQTTESFDISHGNDASYADDDEGYENFGT-SFDYEGQSGDVDENF 356
Query: 373 GSNDAEPSFSSYPQEKEPFPSQDSDMDGNFENVDEYIFLSLGLRSKKNAWAGPDHWKYGK 432
G N+AEP +S++ +E EP QD D D ENVD+Y+FLSLG+ SK+N+WAGPDHWKY K
Sbjct: 357 GPNEAEPIYSNFHEEVEPASLQDMDSDDRLENVDDYLFLSLGISSKQNSWAGPDHWKYRK 416
Query: 433 AKESVARCTSEDDSTLETRQPRAKRQDEDDLEFTSCLETKFPDIFCPPKNSKSLLLPENR 492
K + SE S+ ++ R K+Q E +L+F LE + PDIF PPKN K+LLLP +R
Sbjct: 417 TKGPDVQPASEIKSSPPAKKTRKKKQAEPELDFAKALEEEMPDIFAPPKNPKTLLLPASR 476
Query: 493 PPCVTKLPEDCHYEPQDLVKLFLLPNVKCLGRRARKLSGDVSEEQGNDYESFPSWDNGGV 552
PC TKLPEDCHY+P++L+KLFLLPNV CLGRR RK SG+ S +Q +DYE SW N V
Sbjct: 477 TPCQTKLPEDCHYQPENLIKLFLLPNVMCLGRRRRKNSGETSRQQPDDYEHGESWGNDNV 536
Query: 553 -----GDGEYDGDTHSDIDDPSTLISQPRRVNKIEVDYDKTSKQVDVQALKIALWDHIQE 607
G + + + SD +D +TLISQPR+VNKI+V YDK SKQVDVQ LK LW+ +QE
Sbjct: 537 YDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQYDKASKQVDVQVLKETLWECLQE 596
Query: 608 SIQLHVPGEK------ETVSFRDMLTNFP-SCNAAATVTDISPHLCFICLLHLANEKGLS 660
S Q + E+ E+ SF+ +L +FP C AA DISPHLCFICLLHLANE LS
Sbjct: 597 SHQPPIQDEEHQQEPPESRSFKVLLASFPDDCQAAERTQDISPHLCFICLLHLANEHNLS 656
Query: 661 IENCPNLDDLSIYM 674
+ NLDDL+I++
Sbjct: 657 LIGSQNLDDLTIHL 670