Miyakogusa Predicted Gene

Lj3g3v1296990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1296990.1 tr|F2CPY5|F2CPY5_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,77.59,9e-18,RING/U-box,NULL; zf-RING_2,Zinc finger, RING-type;
ZF_RING_2,Zinc finger, RING-type; no description,,CUFF.42419.1
         (275 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22000.3 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-...   278   4e-75
AT5G22000.1 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-...   278   4e-75
AT5G22000.2 | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-...   277   6e-75
AT4G14220.1 | Symbols: RHF1A | RING-H2 group F1A | chr4:8196012-...   111   6e-25
AT4G00335.2 | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-...    60   1e-09
AT4G00335.1 | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-...    60   1e-09
AT5G15790.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    59   4e-09
AT5G15790.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    59   4e-09
AT4G00335.3 | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-...    59   5e-09
AT3G02290.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    58   6e-09
AT5G38895.3 | Symbols:  | RING/U-box superfamily protein | chr5:...    58   6e-09
AT5G38895.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    58   8e-09
AT3G58720.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    58   9e-09
AT3G58720.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    57   1e-08
AT5G38895.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    57   2e-08
AT4G23450.3 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily p...    55   4e-08
AT4G23450.2 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily p...    55   4e-08
AT5G41350.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    55   5e-08
AT4G23450.1 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily p...    55   7e-08
AT1G18780.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    53   2e-07
AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein |...    52   4e-07
AT4G26400.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    51   8e-07
AT4G26400.2 | Symbols:  | RING/U-box superfamily protein | chr4:...    51   8e-07
AT3G19910.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    51   8e-07
AT1G32361.1 | Symbols: ATL1F | RING/U-box superfamily protein | ...    51   1e-06
AT3G10910.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    50   1e-06
AT5G42940.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    50   2e-06
AT4G12140.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    50   2e-06
AT1G14200.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    49   3e-06
AT4G32600.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    49   3e-06
AT5G37270.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    49   4e-06
AT1G53820.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    49   4e-06
AT5G37250.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    49   4e-06
AT2G17730.1 | Symbols: NIP2 | NEP-interacting protein 2 | chr2:7...    49   4e-06
AT2G20030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    49   5e-06
AT1G72310.1 | Symbols: ATL3 | RING/U-box superfamily protein | c...    48   6e-06
AT3G14320.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...    48   6e-06
AT2G03000.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    48   8e-06
AT5G05530.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    48   9e-06
AT5G43420.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    47   9e-06
AT4G34040.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    47   1e-05

>AT5G22000.3 | Symbols: RHF2A | RING-H2 group F2A |
           chr5:7277436-7279553 FORWARD LENGTH=375
          Length = 375

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 141/168 (83%)

Query: 10  ETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQ 69
           ETT SE HLTSAAAFVEGGIQDACDDACSICLE FC+S+PST+T CKHE+HLQCILEWCQ
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQ 65

Query: 70  RSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDFELQHLPVGA 129
           RSSQCPMCWQ ISLKDPTSQELLEAVE+ERN RFNP+RNA IF HPTLGDFELQHLPVG 
Sbjct: 66  RSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGV 125

Query: 130 NDADLEERIIQHLXXXXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFST 177
           ++A++EERIIQHL               EG R+RSS+QG  QF+VFS+
Sbjct: 126 DNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSS 173


>AT5G22000.1 | Symbols: RHF2A | RING-H2 group F2A |
           chr5:7277436-7279553 FORWARD LENGTH=375
          Length = 375

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 141/168 (83%)

Query: 10  ETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQ 69
           ETT SE HLTSAAAFVEGGIQDACDDACSICLE FC+S+PST+T CKHE+HLQCILEWCQ
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQ 65

Query: 70  RSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDFELQHLPVGA 129
           RSSQCPMCWQ ISLKDPTSQELLEAVE+ERN RFNP+RNA IF HPTLGDFELQHLPVG 
Sbjct: 66  RSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGV 125

Query: 130 NDADLEERIIQHLXXXXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFST 177
           ++A++EERIIQHL               EG R+RSS+QG  QF+VFS+
Sbjct: 126 DNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSS 173


>AT5G22000.2 | Symbols: RHF2A | RING-H2 group F2A |
           chr5:7277436-7279553 FORWARD LENGTH=375
          Length = 375

 Score =  277 bits (708), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 130/177 (73%), Positives = 144/177 (81%), Gaps = 4/177 (2%)

Query: 1   MEVPVMEENETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFH 60
           MEV V     TT SE HLTSAAAFVEGGIQDACDDACSICLE FC+S+PST+T CKHE+H
Sbjct: 1   MEVRV----STTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYH 56

Query: 61  LQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDF 120
           LQCILEWCQRSSQCPMCWQ ISLKDPTSQELLEAVE+ERN RFNP+RNA IF HPTLGDF
Sbjct: 57  LQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDF 116

Query: 121 ELQHLPVGANDADLEERIIQHLXXXXXXXXXXXXXXXEGQRNRSSAQGRPQFLVFST 177
           ELQHLPVG ++A++EERIIQHL               EG R+RSS+QG  QF+VFS+
Sbjct: 117 ELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSS 173


>AT4G14220.1 | Symbols: RHF1A | RING-H2 group F1A |
           chr4:8196012-8198240 FORWARD LENGTH=371
          Length = 371

 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 54/66 (81%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLE 93
           DDACSICLE F   +PSTVT CKHE+HLQCI+EW QRS +CP+CWQ   L+DP SQELL 
Sbjct: 43  DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVLRDPASQELLA 102

Query: 94  AVERER 99
           AVE+ER
Sbjct: 103 AVEKER 108


>AT4G00335.2 | Symbols: RHB1A | RING-H2 finger B1A |
           chr4:146866-147962 FORWARD LENGTH=190
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 85
           +D C IC ED+    P   T C+HEFHL C+LEW +RS +CP+C + +   D
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187


>AT4G00335.1 | Symbols: RHB1A | RING-H2 finger B1A |
           chr4:146866-147962 FORWARD LENGTH=190
          Length = 190

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 85
           +D C IC ED+    P   T C+HEFHL C+LEW +RS +CP+C + +   D
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187


>AT5G15790.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:5149800-5150964 FORWARD LENGTH=232
          Length = 232

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           +D C  CLE++    P  VT C H FHL CI EW +RS  CP+C
Sbjct: 179 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVC 222


>AT5G15790.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:5149800-5150964 FORWARD LENGTH=232
          Length = 232

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           +D C  CLE++    P  VT C H FHL CI EW +RS  CP+C
Sbjct: 179 EDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVC 222


>AT4G00335.3 | Symbols: RHB1A | RING-H2 finger B1A |
           chr4:146866-147957 FORWARD LENGTH=189
          Length = 189

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           +D C IC ED+    P   T C+HEFHL C+LEW +RS +CP+C
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPIC 179


>AT3G02290.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:459385-460688 FORWARD LENGTH=231
          Length = 231

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 85
           +D C  CLE++    P  VT C H FHL CI EW +RS  CP+C + +   +
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNE 229


>AT5G38895.3 | Symbols:  | RING/U-box superfamily protein |
           chr5:15571302-15573315 FORWARD LENGTH=326
          Length = 326

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 85
           +D C  CL+D+    P  +T C H FHL CI EW +RS  CP+C + ++  +
Sbjct: 271 EDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 322


>AT5G38895.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:15571321-15573315 FORWARD LENGTH=296
          Length = 296

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 85
           +D C  CL+D+    P  +T C H FHL CI EW +RS  CP+C + ++  +
Sbjct: 241 EDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 292


>AT3G58720.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:21716920-21717892 REVERSE LENGTH=238
          Length = 238

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQE 90
           D  CS+CLEDF   E   +T CKH FH +CI+ W +   QCP+C     +  PT Q+
Sbjct: 141 DKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCR--FVILKPTKQD 195


>AT3G58720.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:21716920-21717908 REVERSE LENGTH=266
          Length = 266

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQE 90
           D  CS+CLEDF   E   +T CKH FH +CI+ W +   QCP+C + + LK PT Q+
Sbjct: 169 DKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVC-RFVILK-PTKQD 223


>AT5G38895.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:15572084-15573315 FORWARD LENGTH=221
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKD 85
           +D C  CL+D+    P  +T C H FHL CI EW +RS  CP+C + ++  +
Sbjct: 166 EDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDE 217


>AT4G23450.3 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily
           protein | chr4:12241113-12242190 REVERSE LENGTH=208
          Length = 208

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 35  DACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           D C ICLE++    P  +T C H+FHL CIL W +RS  CP+C
Sbjct: 157 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVC 199


>AT4G23450.2 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily
           protein | chr4:12241113-12242190 REVERSE LENGTH=208
          Length = 208

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 35  DACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           D C ICLE++    P  +T C H+FHL CIL W +RS  CP+C
Sbjct: 157 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVC 199


>AT5G41350.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:16542026-16543092 REVERSE LENGTH=212
          Length = 212

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 37  CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           C ICLE++    P  V  C H FHL CILEW +RS  CP+C
Sbjct: 161 CPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVC 201


>AT4G23450.1 | Symbols: AIRP1, AtAIRP1 | RING/U-box superfamily
           protein | chr4:12241113-12241837 REVERSE LENGTH=153
          Length = 153

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%)

Query: 35  DACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           D C ICLE++    P  +T C H+FHL CIL W +RS  CP+C
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVC 144


>AT1G18780.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:6476258-6477235 REVERSE LENGTH=325
          Length = 325

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 34  DDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           +D C+ICLE+F D        C HEF  +C+LEW  RS  CP+C
Sbjct: 274 NDVCTICLEEFDDGRSIVTLPCGHEFDEECVLEWFVRSHVCPLC 317


>AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein |
           chr5:22818254-22819444 FORWARD LENGTH=396
          Length = 396

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 37  CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPI---SLKDPTSQELLE 93
           CS+CL+DF     +    CKH+FH++CI+ W +  S CP+C   +   +  D  ++   E
Sbjct: 259 CSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDDDETKTDSE 318

Query: 94  AVERERNVR 102
            V R RNVR
Sbjct: 319 RVLRTRNVR 327


>AT4G26400.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:13344953-13346023 REVERSE LENGTH=356
          Length = 356

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 37  CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           CSICL+DF     +    CKH+FH++CI+ W +  S CP+C
Sbjct: 241 CSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVC 281


>AT4G26400.2 | Symbols:  | RING/U-box superfamily protein |
           chr4:13344953-13346023 REVERSE LENGTH=356
          Length = 356

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 37  CSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           CSICL+DF     +    CKH+FH++CI+ W +  S CP+C
Sbjct: 241 CSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVC 281


>AT3G19910.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:6926497-6929324 FORWARD LENGTH=340
          Length = 340

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 24  FVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPIS 82
           + EG  Q+  +++C IC  D+ D E   +  CKH +H +CI  W + +  CP+C   +S
Sbjct: 275 YKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVS 333


>AT1G32361.1 | Symbols: ATL1F | RING/U-box superfamily protein |
           chr1:11675531-11676529 FORWARD LENGTH=332
          Length = 332

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 28  GIQDACDDACSICLEDFCDSEP-STVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 86
            ++D   D CSICL +F D +    ++ C H FH  CI  W +    CP+C + + ++D 
Sbjct: 145 SVKDHGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDR 204

Query: 87  TSQE 90
           TS E
Sbjct: 205 TSLE 208


>AT3G10910.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:3413068-3413613 REVERSE LENGTH=181
          Length = 181

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 28  GIQDACDDACSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 86
           GI D     C ICL DF D E   V   C H FH++CI  W    S CP C Q + L+ P
Sbjct: 105 GIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQP 164

Query: 87  T 87
           +
Sbjct: 165 S 165


>AT5G42940.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:17216649-17219171 REVERSE LENGTH=691
          Length = 691

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 30  QDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           QDA  + C +C E++ + E      C HEFH QCI EW ++ + CP+C
Sbjct: 632 QDA--EPCCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPIC 677


>AT4G12140.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:7266546-7267154 REVERSE LENGTH=202
          Length = 202

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 35  DACSICLEDFCDSEPS--TVTGCKHEFHLQCILEWCQRSSQCPMC 77
           D+CSICL+    S  +  T   C H FH  C++EW +R + CPMC
Sbjct: 151 DSCSICLQSLVSSSKTGPTRMSCSHVFHSSCLVEWLKRKNTCPMC 195


>AT1G14200.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:4854532-4855071 REVERSE LENGTH=179
          Length = 179

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 36  ACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           +C+ICL+++   + +    CKH+FH +C+ EW  R + CPMC
Sbjct: 108 SCAICLDEWSKGDVAAEMPCKHKFHSKCVEEWLGRHATCPMC 149


>AT4G32600.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:15724010-15725737 FORWARD LENGTH=453
          Length = 453

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 7   EENETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILE 66
           ++N ++ SE  + +A    E  I    D  C ICL  + ++E      C H FH +C+ +
Sbjct: 334 DDNGSSTSEGGVVAAGTDNERAISGE-DAVCCICLAKYANNEELRELPCSHFFHKECVDK 392

Query: 67  WCQRSSQCPMCWQPISLK--DPTSQELLEAVERERN 100
           W + ++ CP+C   +  K  D TSQ +L ++    N
Sbjct: 393 WLKINASCPLCKSEVGEKNSDLTSQGILTSLSSGEN 428


>AT5G37270.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:14757933-14758559 REVERSE LENGTH=208
          Length = 208

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 36  ACSICLEDFCDSEPSTVT---GCKHEFHLQCILEWCQRSSQCPMC 77
            CSICLEDF +S    +     C H FH  CI EW +R   CP+C
Sbjct: 152 TCSICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQRSCPLC 196


>AT1G53820.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:20091491-20092423 FORWARD LENGTH=310
          Length = 310

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 37  CSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAV 95
           C++CL D  D + + V   C H FH+ CI  W Q  S CP+C   +   + T+    E +
Sbjct: 120 CAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHGGSEGL 179

Query: 96  ERERNV-------RFNPSRNAAIFH 113
            + +N        + NPS++ +  H
Sbjct: 180 PQNQNFESGHSTNQHNPSQDQSFVH 204


>AT5G37250.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:14750393-14750971 FORWARD LENGTH=192
          Length = 192

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 36  ACSICLEDFCDSEPSTVT---GCKHEFHLQCILEWCQRSSQCPMC 77
            CSICLEDF +S    +     C H FH  CI EW +R   CP+C
Sbjct: 136 TCSICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQRSCPLC 180


>AT2G17730.1 | Symbols: NIP2 | NEP-interacting protein 2 |
           chr2:7704142-7705312 FORWARD LENGTH=241
          Length = 241

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 35  DACSICLEDFCDSEP-STVTGCKHEFHLQCILEWCQRSSQCPMCWQPI 81
           D+CS+CL+DF   E   ++  C H FHL CI  W  R   CPMC + I
Sbjct: 194 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241


>AT2G20030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:8647813-8648985 FORWARD LENGTH=390
          Length = 390

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 37  CSICLEDFCDSEP-STVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTS 88
           CS+CL  F D E    +  C+H FH+ CI +W ++ + CP+C   ++++D  S
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLS 176


>AT1G72310.1 | Symbols: ATL3 | RING/U-box superfamily protein |
           chr1:27226405-27227379 FORWARD LENGTH=324
          Length = 324

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 30  QDACDDA--CSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPISLKDP 86
           QD+C D   CSICL +    + + +   C H FH++CI  W Q  S CP+C   +   + 
Sbjct: 118 QDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQ 177

Query: 87  TSQELLEAV 95
            S + +E V
Sbjct: 178 ASSKRVEQV 186


>AT3G14320.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr3:4777731-4778345 REVERSE LENGTH=204
          Length = 204

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 37  CSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAV 95
           C +CL +  D + + V   C H FH++CI  W Q +S CP+C + + LK   ++  L   
Sbjct: 88  CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRPELGG- 146

Query: 96  ERERNVRFNPSRNAAIFHH 114
              R+  FN + +    HH
Sbjct: 147 ---RDKSFNQNHDQTSEHH 162


>AT2G03000.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:875233-877207 FORWARD LENGTH=535
          Length = 535

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 23  AFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMC 77
           A VE G        C IC E++  S+  T   CKH++HL+C+ +W +  + CP C
Sbjct: 474 AMVEKG-------ECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQC 521


>AT5G05530.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:1635492-1636091 FORWARD LENGTH=199
          Length = 199

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 35  DACSICLEDFCDSEPSTVT-GCKHEFHLQCILEWCQRSSQCPMCWQPI 81
           + C+ICLE+ C  E S  T  C H FH  C+  W +  S CP+C  PI
Sbjct: 146 NECTICLEELCHDEESIETHDCCHVFHKLCLWRWIRTKSSCPLCRHPI 193


>AT5G43420.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:17451790-17452917 FORWARD LENGTH=375
          Length = 375

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 37  CSICLEDFCDSEP-STVTGCKHEFHLQCILEWCQRSSQCPMCWQPIS 82
           CS+CL +F D E    +  C H FH+ CI  W Q ++ CP+C   +S
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVS 184


>AT4G34040.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:16304638-16307503 REVERSE LENGTH=666
          Length = 666

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 10  ETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQ 69
           +  K   H +SAA    G  QD   + C +C E++ + +     GC HEFH  C+ +W  
Sbjct: 598 KVMKQHKHTSSAA----GSHQDM--EPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLM 651

Query: 70  RSSQCPMC 77
             + CP+C
Sbjct: 652 LKNLCPIC 659