Miyakogusa Predicted Gene

Lj3g3v1296960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1296960.1 tr|G7IU49|G7IU49_MEDTR DDB1-and CUL4-associated
factor OS=Medicago truncatula GN=MTR_2g093200 PE=4 S,59.76,0,WD40
repeats,WD40 repeat; SUBFAMILY NOT NAMED,NULL; WD REPEAT
DOMAIN-CONTAINING FAMILY,NULL; seg,NUL,CUFF.42413.1
         (248 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45620.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   224   6e-59
AT3G45620.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   224   6e-59
AT4G35140.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   199   1e-51
AT4G38480.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   186   2e-47
AT5G10940.2 | Symbols:  | transducin family protein / WD-40 repe...    65   5e-11
AT5G10940.1 | Symbols:  | transducin family protein / WD-40 repe...    65   5e-11

>AT3G45620.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:16745918-16747993 FORWARD LENGTH=515
          Length = 515

 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 152/254 (59%), Gaps = 29/254 (11%)

Query: 2   LGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRC--YSRISKKMYGPS 59
           LG+H G V+KL V PG P+  YSCGEDGFVQHFD+R++SAT +     +++  ++ +  S
Sbjct: 174 LGRHHGRVYKLAVLPGDPNVFYSCGEDGFVQHFDIRSNSATMVLYSSPFTQGCRRHHSSS 233

Query: 60  IIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLA--LKSDRPLETYFCPHHLIG 117
            I LNSIAIDPRN +Y+AVGGS EYAR+YD RR Q   +   +  D P+ T FCP HL  
Sbjct: 234 RIRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQLAPVCRHVLPDAPVNT-FCPRHLRE 292

Query: 118 SYRIHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWVYPRY 177
           +  +HITG+A                YLFE+N   GSSP S              V P  
Sbjct: 293 TNSVHITGLAYSKAGELLVSYNDELIYLFEKNMGYGSSPVS--------------VSP-- 336

Query: 178 RNKGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVR 237
                + L  +   QVY GH+N   +KGVNFFGPNDEYV SGSDCGHIFIWKKK  KLVR
Sbjct: 337 -----EKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVR 391

Query: 238 LMADD---VNQLAS 248
            M  D   VNQL S
Sbjct: 392 AMVGDRRVVNQLES 405


>AT3G45620.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:16745918-16747993 FORWARD LENGTH=481
          Length = 481

 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 152/254 (59%), Gaps = 29/254 (11%)

Query: 2   LGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRC--YSRISKKMYGPS 59
           LG+H G V+KL V PG P+  YSCGEDGFVQHFD+R++SAT +     +++  ++ +  S
Sbjct: 140 LGRHHGRVYKLAVLPGDPNVFYSCGEDGFVQHFDIRSNSATMVLYSSPFTQGCRRHHSSS 199

Query: 60  IIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLA--LKSDRPLETYFCPHHLIG 117
            I LNSIAIDPRN +Y+AVGGS EYAR+YD RR Q   +   +  D P+ T FCP HL  
Sbjct: 200 RIRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQLAPVCRHVLPDAPVNT-FCPRHLRE 258

Query: 118 SYRIHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWVYPRY 177
           +  +HITG+A                YLFE+N   GSSP S              V P  
Sbjct: 259 TNSVHITGLAYSKAGELLVSYNDELIYLFEKNMGYGSSPVS--------------VSP-- 302

Query: 178 RNKGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVR 237
                + L  +   QVY GH+N   +KGVNFFGPNDEYV SGSDCGHIFIWKKK  KLVR
Sbjct: 303 -----EKLQEMEEPQVYIGHRNAQTVKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVR 357

Query: 238 LMADD---VNQLAS 248
            M  D   VNQL S
Sbjct: 358 AMVGDRRVVNQLES 371


>AT4G35140.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr4:16723873-16726477 REVERSE LENGTH=496
          Length = 496

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 137/242 (56%), Gaps = 9/242 (3%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
            LG H+G   KL +EPG+PH  Y+CGEDG VQ FDLRT + T+LF C S +  +      
Sbjct: 143 FLGLHQGRAHKLCIEPGNPHIFYTCGEDGLVQRFDLRTEAPTELFTCRS-VDPRRRNMDA 201

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDRPLETYFCPHHLIGSYR 120
           I+LN+IAIDPRN +  AVGG  EYARLYDIRR Q     L        +FCP HLIG+  
Sbjct: 202 IQLNAIAIDPRNSNLFAVGGMEEYARLYDIRRFQGE--GLNGFTRAADHFCPPHLIGNED 259

Query: 121 IHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSPSSAKCHDDLDNVDAAWVYPRYRNK 180
           + ITG+A                YLF     LGS+P  +        +  + V     + 
Sbjct: 260 VGITGLAFSEQSELLVSYNDEFIYLFTPGMGLGSNPIPSSP------ISKSPVSKSESSS 313

Query: 181 GTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMA 240
              D N    + VY+GHKN   +KGVNFFGP  EYV+SGSDCG IFIW+KK  +L+R+M 
Sbjct: 314 SPKDENEHSVSLVYKGHKNCETVKGVNFFGPRSEYVVSGSDCGRIFIWRKKGGELIRVME 373

Query: 241 DD 242
            D
Sbjct: 374 AD 375


>AT4G38480.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr4:18003957-18006002 FORWARD LENGTH=471
          Length = 471

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 138/247 (55%), Gaps = 39/247 (15%)

Query: 1   MLGKHEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSATKLFRCYSRISKKMYGPSI 60
           +LGKH+G V KL VEPGSP + Y+CGEDG V+HFDLRT  AT LF C     K+     +
Sbjct: 139 LLGKHQGPVHKLAVEPGSPFSFYTCGEDGAVKHFDLRTRVATNLFTC-----KEAKFNLV 193

Query: 61  IELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQ---WRDLALKSDRPLETYFCPHHLIG 117
           + L++IA+DPRNP  +AV G  EYAR+YDIR  +   W +      +P++ +FCP HLIG
Sbjct: 194 VYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSYRSEGWYNFT----QPID-HFCPGHLIG 248

Query: 118 SYRIHITGMAXXXXXXXXXXXXXXXXYLFERNAKLGSSP--SSAKCHDDLDNVDAAWVYP 175
              + ITG+A                YLF  +  LG +P  SS K  + +          
Sbjct: 249 DDHVGITGLAFSDQSELLASYSDEFIYLFTPDMGLGPTPYPSSTKTEERM---------- 298

Query: 176 RYRNKGTDDLNHVGAAQVYEGHKNTGAIKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKL 235
                           QVY+ H N   +KGVNFFGP  EYV+SGSDCG IFIW+KK+ +L
Sbjct: 299 --------------TPQVYKEHTNRETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDGEL 344

Query: 236 VRLMADD 242
           +R M  D
Sbjct: 345 LRAMEAD 351


>AT5G10940.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:3448890-3454127 REVERSE LENGTH=754
          Length = 754

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 22/140 (15%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSA------------TKLFRCYSRIS 52
           H   V KL VEPG+P+ ++S  EDG ++  D R S++            + L    S   
Sbjct: 146 HTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAK 205

Query: 53  KKMYGP--SIIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDR----PL 106
           + +  P    + L S  I    PH + VGGS  +ARLYD R      LA    R    P 
Sbjct: 206 RALADPPKQTLSLKSCDISATRPHLLLVGGSDAFARLYDRR--MLPPLASSRKRMPPPPC 263

Query: 107 ETYFCPHHLI--GSYRIHIT 124
             YFCP HL   G   +H+T
Sbjct: 264 VNYFCPMHLSERGRTNLHLT 283



 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 194 YEGHKNTGA-IKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMADDVNQL 246
           Y GH N G  IK  +F G   EY+ SGSD G  FIW+K+  +L++++  D + L
Sbjct: 610 YVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDESVL 663


>AT5G10940.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:3448890-3454127 REVERSE LENGTH=757
          Length = 757

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 63/140 (45%), Gaps = 22/140 (15%)

Query: 5   HEGSVFKLVVEPGSPHTLYSCGEDGFVQHFDLRTSSA------------TKLFRCYSRIS 52
           H   V KL VEPG+P+ ++S  EDG ++  D R S++            + L    S   
Sbjct: 146 HTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAK 205

Query: 53  KKMYGP--SIIELNSIAIDPRNPHYIAVGGSAEYARLYDIRRCQWRDLALKSDR----PL 106
           + +  P    + L S  I    PH + VGGS  +ARLYD R      LA    R    P 
Sbjct: 206 RALADPPKQTLSLKSCDISATRPHLLLVGGSDAFARLYDRR--MLPPLASSRKRMPPPPC 263

Query: 107 ETYFCPHHLI--GSYRIHIT 124
             YFCP HL   G   +H+T
Sbjct: 264 VNYFCPMHLSERGRTNLHLT 283



 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 194 YEGHKNTGA-IKGVNFFGPNDEYVMSGSDCGHIFIWKKKNAKLVRLMADDVNQL 246
           Y GH N G  IK  +F G   EY+ SGSD G  FIW+K+  +L++++  D + L
Sbjct: 613 YVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGDESVL 666