Miyakogusa Predicted Gene

Lj3g3v1295890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1295890.1 NODE_53064_length_1018_cov_41.135559.path2.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription facto...   228   1e-60
AT2G26580.2 | Symbols: YAB5 | plant-specific transcription facto...   204   2e-53
AT2G26580.1 | Symbols: YAB5 | plant-specific transcription facto...   204   2e-53
AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcrip...   165   1e-41
AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription facto...   159   9e-40
AT4G00180.2 | Symbols: YAB3 | Plant-specific transcription facto...   134   3e-32
AT1G23420.1 | Symbols: INO | Plant-specific transcription factor...   126   6e-30
AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor...   120   6e-28

>AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription factor
           YABBY family protein | chr1:2676033-2679382 FORWARD
           LENGTH=184
          Length = 184

 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 140/186 (75%), Gaps = 13/186 (6%)

Query: 1   MSMDMMGTERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNMGASLQ--TL 58
           MS+D   +ERVCYVHC+FC T LAVSVP +S+ T+VTVRCGHC NLLS+N+G SL   + 
Sbjct: 1   MSVDF-SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA 59

Query: 59  PP--QDPQ-HFQEPS----RKELGSSSRC--KAFEPVSHEQPRNIPPIRPPEKRQRVPSA 109
           PP  QD Q H Q  +    RK+  SSSR      E +  E PR +PPIRPPEKRQRVPSA
Sbjct: 60  PPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPR-MPPIRPPEKRQRVPSA 118

Query: 110 YNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQQGDATQ 169
           YNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDG+K+ K   Q  A Q
Sbjct: 119 YNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVAGQ 178

Query: 170 KSNGLY 175
           KSNG Y
Sbjct: 179 KSNGYY 184


>AT2G26580.2 | Symbols: YAB5 | plant-specific transcription factor
           YABBY family protein | chr2:11303923-11306739 REVERSE
           LENGTH=164
          Length = 164

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 123/167 (73%), Gaps = 10/167 (5%)

Query: 1   MSMDMMGTERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNMGASLQTL-- 58
           M+  +M TE++CY+ CNFCN  LAV+VPCSS+  +VTVRCGHC NL SVNM A+LQ+L  
Sbjct: 1   MANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSR 60

Query: 59  PPQDPQHFQEPSRKELGSSSRCKAFEPVSHEQPRNIPPIR----PPEKRQRVPSAYNRFI 114
           P     ++  P   E GSSSR     P S    R I   R    PPEKRQRVPSAYN+FI
Sbjct: 61  PNFQATNYAVP---EYGSSSRSHTKIP-SRISTRTITEQRIVNRPPEKRQRVPSAYNQFI 116

Query: 115 KEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKL 161
           KEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ +KQAK+
Sbjct: 117 KEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163


>AT2G26580.1 | Symbols: YAB5 | plant-specific transcription factor
           YABBY family protein | chr2:11303923-11306739 REVERSE
           LENGTH=164
          Length = 164

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 123/167 (73%), Gaps = 10/167 (5%)

Query: 1   MSMDMMGTERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNMGASLQTL-- 58
           M+  +M TE++CY+ CNFCN  LAV+VPCSS+  +VTVRCGHC NL SVNM A+LQ+L  
Sbjct: 1   MANSVMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSR 60

Query: 59  PPQDPQHFQEPSRKELGSSSRCKAFEPVSHEQPRNIPPIR----PPEKRQRVPSAYNRFI 114
           P     ++  P   E GSSSR     P S    R I   R    PPEKRQRVPSAYN+FI
Sbjct: 61  PNFQATNYAVP---EYGSSSRSHTKIP-SRISTRTITEQRIVNRPPEKRQRVPSAYNQFI 116

Query: 115 KEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKL 161
           KEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ +KQAK+
Sbjct: 117 KEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163


>AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific
           transcription factor YABBY family protein |
           chr2:18628450-18630552 REVERSE LENGTH=229
          Length = 229

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/196 (50%), Positives = 115/196 (58%), Gaps = 28/196 (14%)

Query: 8   TERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNMGA---------SLQTL 58
           ++ +CYV CNFC T LAV+VP +S+   VTVRCG C NLLSVNM +          LQ  
Sbjct: 22  SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLG 81

Query: 59  P-----PQD--------PQHFQEPSRKELGSSSRCKAFEPV--SHEQPRNIPPIRPPEKR 103
           P     PQD        P +       +  + +   +F  +   HE P+  P  RPPEKR
Sbjct: 82  PHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKR 141

Query: 104 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGS--KQAKL 161
           QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D    K+  +
Sbjct: 142 QRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNM 201

Query: 162 DQQ--GDATQKSNGLY 175
            QQ   D      G Y
Sbjct: 202 PQQEGEDNMVMKEGFY 217


>AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription factor
           YABBY family protein | chr4:72804-75089 REVERSE
           LENGTH=240
          Length = 240

 Score =  159 bits (402), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 119/208 (57%), Gaps = 40/208 (19%)

Query: 8   TERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSV-------------NMGAS 54
           T+++CYVHC+FC+T LAVSVP SS+   VTVRCGHC+NLLSV             N+G S
Sbjct: 22  TDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHS 81

Query: 55  -LQTLPPQDPQHFQEPSRK-------ELGSSSRCKAFEPVSH-----EQPRNIPPIRP-- 99
            L   PP  P +  E  R         +  S    A  P  H        R++  ++   
Sbjct: 82  FLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMP 141

Query: 100 --------PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 151
                   PEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL
Sbjct: 142 RPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 201

Query: 152 KLDG--SKQAKLDQQ--GDATQKSNGLY 175
             D   +K+A + QQ   D      G Y
Sbjct: 202 MADHPPTKKANVRQQEGEDGMMGREGFY 229


>AT4G00180.2 | Symbols: YAB3 | Plant-specific transcription factor
           YABBY family protein | chr4:72804-74888 REVERSE
           LENGTH=209
          Length = 209

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 105/198 (53%), Gaps = 40/198 (20%)

Query: 18  FCNTTLAVSVPCSSMLTVVTVRCGHCANLLSV-------------NMGAS-LQTLPPQDP 63
            C+    VSVP SS+   VTVRCGHC+NLLSV             N+G S L   PP  P
Sbjct: 1   MCDINWQVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPP 60

Query: 64  QHFQEPSRK-------ELGSSSRCKAFEPVSH-----EQPRNIPPIRP----------PE 101
            +  E  R         +  S    A  P  H        R++  ++           PE
Sbjct: 61  PNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPE 120

Query: 102 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDG--SKQA 159
           KRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D   +K+A
Sbjct: 121 KRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKA 180

Query: 160 KLDQQ--GDATQKSNGLY 175
            + QQ   D      G Y
Sbjct: 181 NVRQQEGEDGMMGREGFY 198


>AT1G23420.1 | Symbols: INO | Plant-specific transcription factor
           YABBY family protein | chr1:8317423-8319104 FORWARD
           LENGTH=231
          Length = 231

 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 24/168 (14%)

Query: 3   MDMMGTERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNM--GASLQTLPP 60
            D+ G  ++C+V C FC T L VSVP +S+  VVTVRCGHC +LLSVN+   + +     
Sbjct: 15  FDLPG--QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLL 72

Query: 61  QDPQHFQEPSRKELGSSSRCKAFEPVSHEQPRNIPPI--------------------RPP 100
               H  E  ++E+ ++   +      +++  N P                      +PP
Sbjct: 73  ASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPP 132

Query: 101 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIH 148
           EKRQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP  H
Sbjct: 133 EKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180


>AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor
           YABBY family protein | chr1:26007734-26008940 REVERSE
           LENGTH=181
          Length = 181

 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 83/144 (57%), Gaps = 14/144 (9%)

Query: 9   ERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNMGASLQTLPPQDPQHFQE 68
           E + YV C+ CNT LAV +P   ML  VTV+CGHC NL      + L T PP        
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL------SFLTTTPPLQGHVSLT 72

Query: 69  PSRKELGSSSRCKAFEPVSHEQPRNIPP--------IRPPEKRQRVPSAYNRFIKEEIQR 120
              +  G S   K     S     +  P        ++PPEK+QR+PSAYNRF+++EIQR
Sbjct: 73  LQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQR 132

Query: 121 IKASNPDISHREAFSTAAKNWAHF 144
           IK++NP+I HREAFS AAKNWA +
Sbjct: 133 IKSANPEIPHREAFSAAAKNWAKY 156