Miyakogusa Predicted Gene

Lj3g3v1295880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1295880.1 tr|G7IRH1|G7IRH1_MEDTR Ubiquitin
carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_2g087710
,81.53,0,Cysteine proteinases,NULL; UCH,Peptidase C19, ubiquitin
carboxyl-terminal hydrolase 2; SUBFAMILY NOT,CUFF.42442.1
         (459 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22030.1 | Symbols: UBP8 | ubiquitin-specific protease 8 | ch...   536   e-153
AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 | ch...   536   e-153
AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...   374   e-103
AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 | ...   374   e-103
AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 | ch...   358   4e-99
AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 | ...   346   3e-95
AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific...   305   3e-83
AT4G31670.1 | Symbols: UBP18 | ubiquitin-specific protease 18 | ...   102   6e-22
AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 | ...   100   2e-21
AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 | ...    96   8e-20
AT4G24560.1 | Symbols: UBP16 | ubiquitin-specific protease 16 | ...    94   2e-19
AT2G24640.2 | Symbols: UBP19 | ubiquitin-specific protease 19 | ...    93   4e-19
AT2G24640.1 | Symbols: UBP19 | ubiquitin-specific protease 19 | ...    93   4e-19
AT1G17110.1 | Symbols: UBP15 | ubiquitin-specific protease 15 | ...    89   4e-18
AT1G17110.2 | Symbols: UBP15 | ubiquitin-specific protease 15 | ...    89   4e-18
AT4G17895.1 | Symbols: UBP20 | ubiquitin-specific protease 20 | ...    89   8e-18
AT5G10790.1 | Symbols: UBP22 | ubiquitin-specific protease 22 | ...    86   5e-17
AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 | ...    84   2e-16
AT4G30890.3 | Symbols: UBP24 | ubiquitin-specific protease 24 | ...    79   6e-15
AT4G30890.2 | Symbols: UBP24 | ubiquitin-specific protease 24 | ...    79   6e-15
AT4G30890.1 | Symbols: UBP24 | ubiquitin-specific protease 24 | ...    79   6e-15
AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific proteas...    77   4e-14
AT2G32780.1 | Symbols: UBP1, ATUBP1 | ubiquitin-specific proteas...    75   8e-14
AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific proteas...    75   1e-13
AT2G22310.1 | Symbols: ATUBP4, UBP4 | ubiquitin-specific proteas...    74   2e-13
AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 | ch...    74   2e-13
AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 | ...    72   9e-13
AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 | ...    69   9e-12
AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 | ...    69   9e-12
AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...    66   4e-11
AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...    66   4e-11
AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...    66   4e-11
AT3G49600.1 | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specifi...    61   2e-09
AT4G22285.1 | Symbols:  | Ubiquitin C-terminal hydrolases superf...    52   8e-07
AT4G22350.1 | Symbols:  | Ubiquitin C-terminal hydrolases superf...    52   9e-07
AT4G22350.2 | Symbols:  | Ubiquitin C-terminal hydrolases superf...    52   1e-06
AT4G39370.1 | Symbols: UBP27 | ubiquitin-specific protease 27 | ...    50   4e-06

>AT5G22030.1 | Symbols: UBP8 | ubiquitin-specific protease 8 |
           chr5:7290155-7296344 REVERSE LENGTH=913
          Length = 913

 Score =  536 bits (1382), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/446 (60%), Positives = 334/446 (74%), Gaps = 27/446 (6%)

Query: 30  SLLMC--ARKVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQLLPYTISVPKNGR 87
           S L+C   +KVSV FDPFMYLSLPLP T+MRTM LTV+S+  DG S  +P T++VPK G+
Sbjct: 475 STLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSA--DGSSLPIPLTVNVPKFGK 532

Query: 88  FEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDADKLVAYRFMKDNG 147
           FEDL +AL TACSL  +ETLLV EVYNN IIRFLE+P+DSL+LIRD DKLV YR  KD  
Sbjct: 533 FEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDAN 592

Query: 148 DAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARLCNTINGSDLCNLYLKWFRSFQISI 207
           ++PL+V+++Q++EEQ+I GK++P WKAFGIP+V+RLC+  NGSD+ NLYLK   SF++  
Sbjct: 593 NSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPT 652

Query: 208 EEALENCLVP-----------------EKTEEVAEVQGVSTPSDEGMEFYMTDEKGTVKN 250
           E   EN   P                 E T      +   +  D  +  Y+TD++G    
Sbjct: 653 EFFTENLENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIE 712

Query: 251 SKILMNEPLAINEELKLLHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKRPQESASLY 310
           +++L  +P+    + K L+VL  W  K++  YDT L SSLPEV KS    KRPQES SL+
Sbjct: 713 AEMLKEKPV---NKSKRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQESVSLF 767

Query: 311 KCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKNKLE 370
           KCLEAFL EEPLGPDDMWYCPGCKEHRQA KKLDLWRLPEILVIHLKRF YSR+MKNKLE
Sbjct: 768 KCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLE 827

Query: 371 TYVDFPVDNLDLSAYIAHADDK-SYKYTLYAVSNHYGSMGGGHYTAFVHHGGDQWYDFDD 429
            YVDFP+DNLDLS+YI++ + + +Y+Y LYA+SNHYGSMGGGHYTA+VHHGGD+WYDFDD
Sbjct: 828 AYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWYDFDD 887

Query: 430 SRVYPISKEKIKSSAAYVLFYRRVFE 455
           S V+ IS+EKIK+SAAYVLFY+R+ +
Sbjct: 888 SHVHQISQEKIKTSAAYVLFYKRLVD 913


>AT5G22030.2 | Symbols: UBP8 | ubiquitin-specific protease 8 |
           chr5:7290155-7296344 REVERSE LENGTH=913
          Length = 913

 Score =  536 bits (1382), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/446 (60%), Positives = 334/446 (74%), Gaps = 27/446 (6%)

Query: 30  SLLMC--ARKVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQLLPYTISVPKNGR 87
           S L+C   +KVSV FDPFMYLSLPLP T+MRTM LTV+S+  DG S  +P T++VPK G+
Sbjct: 475 STLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSA--DGSSLPIPLTVNVPKFGK 532

Query: 88  FEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDADKLVAYRFMKDNG 147
           FEDL +AL TACSL  +ETLLV EVYNN IIRFLE+P+DSL+LIRD DKLV YR  KD  
Sbjct: 533 FEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDAN 592

Query: 148 DAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARLCNTINGSDLCNLYLKWFRSFQISI 207
           ++PL+V+++Q++EEQ+I GK++P WKAFGIP+V+RLC+  NGSD+ NLYLK   SF++  
Sbjct: 593 NSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPT 652

Query: 208 EEALENCLVP-----------------EKTEEVAEVQGVSTPSDEGMEFYMTDEKGTVKN 250
           E   EN   P                 E T      +   +  D  +  Y+TD++G    
Sbjct: 653 EFFTENLENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIE 712

Query: 251 SKILMNEPLAINEELKLLHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKRPQESASLY 310
           +++L  +P+    + K L+VL  W  K++  YDT L SSLPEV KS    KRPQES SL+
Sbjct: 713 AEMLKEKPV---NKSKRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQESVSLF 767

Query: 311 KCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKNKLE 370
           KCLEAFL EEPLGPDDMWYCPGCKEHRQA KKLDLWRLPEILVIHLKRF YSR+MKNKLE
Sbjct: 768 KCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLE 827

Query: 371 TYVDFPVDNLDLSAYIAHADDK-SYKYTLYAVSNHYGSMGGGHYTAFVHHGGDQWYDFDD 429
            YVDFP+DNLDLS+YI++ + + +Y+Y LYA+SNHYGSMGGGHYTA+VHHGGD+WYDFDD
Sbjct: 828 AYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWYDFDD 887

Query: 430 SRVYPISKEKIKSSAAYVLFYRRVFE 455
           S V+ IS+EKIK+SAAYVLFY+R+ +
Sbjct: 888 SHVHQISQEKIKTSAAYVLFYKRLVD 913


>AT4G10590.1 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/450 (48%), Positives = 292/450 (64%), Gaps = 38/450 (8%)

Query: 30  SLLMCAR--KVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQLLPYTISVPKNGR 87
           S L+C    K+S+TFDPFMYLS+PLPST  R+MT+TV    CDG    +PYT+ VPKNG 
Sbjct: 457 STLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFY--CDGSHLPMPYTVIVPKNGS 514

Query: 88  FEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDADKLVAYRFM---K 144
             DL  ALGTAC L  DE+LL+AEVY++ I ++ E+P DSLS I+D + +VAYR     K
Sbjct: 515 IRDLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPK 574

Query: 145 DNGDAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARL-CNTINGSDLCNLYLKWFRSF 203
            +G A L + ++   +   +      + K FG P V  +    ++G+D+  +  ++    
Sbjct: 575 GSGKAKLEI-LHGGQKRPILESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPL 633

Query: 204 Q-----ISIEEALENCLVPEKT-EEVAEVQGVSTP-------SDEGMEF--YMTDEKGTV 248
                   I    EN  +P+ T +E +E+  +S+P       SD  + F  ++TDE+G  
Sbjct: 634 HKVHAPSKIHNGSENGHLPDATVDEASEI--LSSPDTEIDDASDRELSFRIFLTDERG-- 689

Query: 249 KNSKILMNEPLAINEELKL---LHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKRP-Q 304
                L  +PL     + L     VLV W+E + + YD+   S LPEV K+SF AK+  Q
Sbjct: 690 -----LNFKPLQSESSISLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQ 744

Query: 305 ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRY 364
           ES SL+ CLEAFL EEPLGPDDMW+CP CKEHRQA+KKLDLW+LP+ILV HLKRF YSRY
Sbjct: 745 ESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 804

Query: 365 MKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGGGHYTAFVHHGGD-Q 423
           +KNK++T+V+FPV +LDLS Y+ + +D+SY Y LYAVSNHYG +GGGHYTA+     D +
Sbjct: 805 LKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNE 864

Query: 424 WYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
           WY FDDS V  +++ +IK+SAAYVLFYRRV
Sbjct: 865 WYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894


>AT4G10590.2 | Symbols: UBP10 | ubiquitin-specific protease 10 |
           chr4:6538919-6543272 REVERSE LENGTH=910
          Length = 910

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/450 (48%), Positives = 292/450 (64%), Gaps = 38/450 (8%)

Query: 30  SLLMCAR--KVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQLLPYTISVPKNGR 87
           S L+C    K+S+TFDPFMYLS+PLPST  R+MT+TV    CDG    +PYT+ VPKNG 
Sbjct: 457 STLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFY--CDGSHLPMPYTVIVPKNGS 514

Query: 88  FEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDADKLVAYRFM---K 144
             DL  ALGTAC L  DE+LL+AEVY++ I ++ E+P DSLS I+D + +VAYR     K
Sbjct: 515 IRDLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPK 574

Query: 145 DNGDAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARL-CNTINGSDLCNLYLKWFRSF 203
            +G A L + ++   +   +      + K FG P V  +    ++G+D+  +  ++    
Sbjct: 575 GSGKAKLEI-LHGGQKRPILESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPL 633

Query: 204 Q-----ISIEEALENCLVPEKT-EEVAEVQGVSTP-------SDEGMEF--YMTDEKGTV 248
                   I    EN  +P+ T +E +E+  +S+P       SD  + F  ++TDE+G  
Sbjct: 634 HKVHAPSKIHNGSENGHLPDATVDEASEI--LSSPDTEIDDASDRELSFRIFLTDERG-- 689

Query: 249 KNSKILMNEPLAINEELKL---LHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKRP-Q 304
                L  +PL     + L     VLV W+E + + YD+   S LPEV K+SF AK+  Q
Sbjct: 690 -----LNFKPLQSESSISLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQ 744

Query: 305 ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRY 364
           ES SL+ CLEAFL EEPLGPDDMW+CP CKEHRQA+KKLDLW+LP+ILV HLKRF YSRY
Sbjct: 745 ESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRY 804

Query: 365 MKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGGGHYTAFVHHGGD-Q 423
           +KNK++T+V+FPV +LDLS Y+ + +D+SY Y LYAVSNHYG +GGGHYTA+     D +
Sbjct: 805 LKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNE 864

Query: 424 WYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
           WY FDDS V  +++ +IK+SAAYVLFYRRV
Sbjct: 865 WYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894


>AT4G10570.1 | Symbols: UBP9 | ubiquitin-specific protease 9 |
           chr4:6523657-6528058 REVERSE LENGTH=923
          Length = 923

 Score =  358 bits (920), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/447 (47%), Positives = 287/447 (64%), Gaps = 32/447 (7%)

Query: 30  SLLMC--ARKVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQLLPYTISVPKNGR 87
           S L+C    K+S+TFDPFMYLS+PLPST  R+MT+TV    CDG    +PYT+ VPK G 
Sbjct: 458 STLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFY--CDGSRLPMPYTVIVPKQGS 515

Query: 88  FEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDADKLVAYRFM---K 144
             DL  ALGTAC L  DE+LL+AEVY++ I R+ E P DSLS I+D + +VAYR     K
Sbjct: 516 IRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPK 575

Query: 145 DNGDAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARL-CNTINGSDLCNLYLKWFRSF 203
            +  A L + ++   E   +      + K FG P V  +    ++G+D+  +   +    
Sbjct: 576 GSRKAKLEI-LHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPL 634

Query: 204 Q-----ISIEEALENCLVPEKTEEVAEVQGV-STP-------SDEGMEF--YMTDEKGTV 248
                   I    +N  + + T  V +  G+ S+P       SD  + F  ++TDE+G  
Sbjct: 635 HKVHAPSKIHNGSDNGHLADAT--VDQASGILSSPDTEIDNASDRELSFRIFLTDERGL- 691

Query: 249 KNSKILMNEPLAINEELKLLHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKRP-QESA 307
            N K L +E  +I+    +  VLV W+E + + YD+   S LPEV K+SF AK+  QES 
Sbjct: 692 -NIKPLQSES-SISPG-TVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESI 748

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
           SL+ CLEAFL EEPLGPDDMW+CP CKEHRQA+KKLDLW+LP+ILV HLKRF YSRY+KN
Sbjct: 749 SLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKN 808

Query: 368 KLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGGGHYTAFVHHGGD-QWYD 426
           K++T+V+FPV +LDLS Y+ + + +SY Y LYAVSNHYG +GGGHYTA+     D +WY 
Sbjct: 809 KIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYH 868

Query: 427 FDDSRVYPISKEKIKSSAAYVLFYRRV 453
           FDDS V  +++ +I++SAAYVLFYRRV
Sbjct: 869 FDDSHVSSVNESEIRNSAAYVLFYRRV 895


>AT1G32850.1 | Symbols: UBP11 | ubiquitin-specific protease 11 |
           chr1:11902629-11906900 FORWARD LENGTH=892
          Length = 892

 Score =  346 bits (887), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 200/448 (44%), Positives = 281/448 (62%), Gaps = 22/448 (4%)

Query: 18  SIGTIIWLAMIPSLLMCAR--KVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQL 75
           S+   ++     S L+C    K+S+TFDPFMYLSLPLPS+  R+MT+TV     DG    
Sbjct: 443 SVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLSLPLPSSRTRSMTVTVFYG--DGSHLP 500

Query: 76  LPYTISVPKNGRFEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDAD 135
           +PYT++VPK+G   DL+ ALGTAC L  DE+LL+AEVY++ + ++ E+P + L+ I+D +
Sbjct: 501 MPYTVTVPKDGSCRDLSNALGTACCLDNDESLLLAEVYDHKVFKYYENPRELLNGIKDNE 560

Query: 136 KLVAYRFMKDNGDAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARLCNT-INGSDLC- 193
            +VAYRF K     P  V +     EQ       P  K FG P+V  +    ++G+D+  
Sbjct: 561 HIVAYRF-KQMHKGPGKVKLEILHGEQEKSSDRGP--KCFGTPLVTYINKEPLSGTDIAT 617

Query: 194 --NLYLKWFRSFQIS--IEEALENCLVPEKTEEVAEVQGVSTPSDEGMEFYMTDEKGTVK 249
             +  L   R   +S  +    EN  VP+++      +   T  D   E  ++     ++
Sbjct: 618 SISGLLSPLRRVHMSCVVNSGNENGHVPDESSRSILSRDTET-EDNDRELSLS----LLR 672

Query: 250 NSKILMNEPLAINEELK---LLHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKRPQES 306
           +      +PL  +  +    +  VLV W+EK+ + YD+   + LP+V K+    K  QE 
Sbjct: 673 DYYSFNLQPLESDSVVNPGSVTKVLVKWNEKEHEKYDSSYLNDLPKVHKNVLAKKTMQEG 732

Query: 307 ASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMK 366
            SL+ CLEAFL EEPLGPDDMWYCPGCKEHRQA+KKLDLW+LP+ILV HLKRF YSRY K
Sbjct: 733 ISLFSCLEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFK 792

Query: 367 NKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGGGHYTAFVHHGGD-QWY 425
           NK++T V+F + +LDLS Y+ + D +SY Y LYA+SNHYG +GGGHYTA+     + +WY
Sbjct: 793 NKIDTLVNFHIHDLDLSKYVKNEDGQSYLYELYAISNHYGGLGGGHYTAYAKLMDETKWY 852

Query: 426 DFDDSRVYPISKEKIKSSAAYVLFYRRV 453
           +FDDSRV  +++ +IK+SAAYVLFY+RV
Sbjct: 853 NFDDSRVSAVNESEIKTSAAYVLFYQRV 880


>AT2G40930.1 | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific
           protease 5 | chr2:17076714-17082192 REVERSE LENGTH=924
          Length = 924

 Score =  305 bits (782), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 194/453 (42%), Positives = 262/453 (57%), Gaps = 38/453 (8%)

Query: 30  SLLMC--ARKVSVTFDPFMYLSLPLPSTTMRTMTLTVVSSNCDGKSQLLPYTISVPKNGR 87
           S L+C    KVSVTFDPFMYLSLPL   T R +T+TV S  CD  +     T++V K GR
Sbjct: 471 STLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFS--CDKTALPSTITVNVSKQGR 528

Query: 88  FEDLTRALGTACSLGADETLLVAEVYNNCIIRFLEDPSDSLSLIRDADKLVAYRFMKDNG 147
             DL +AL  ACSL   E L +AE+ NN I R  EDP   LS I+D D L AY+  K + 
Sbjct: 529 CRDLIQALTNACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHLAAYKLSKSSE 588

Query: 148 DAPLVVFINQRMEEQYIHGKAAPNWKAFGIPVVARL-CNT--INGSDLCNLY--LKWFRS 202
           +  L+  + +R +++    ++    K  G P+++   C      G   C +   L  FR 
Sbjct: 589 NTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCLVQNMLSPFRR 648

Query: 203 FQISIEEALENCLVPEK-------TEEVAEVQGV-----STPSDEG---MEFYMTDEKGT 247
            +   ++   +  +PE+       TEE  +V G+     S  SD G   +   + DE   
Sbjct: 649 EESVGKKGNSDSSIPERRSARFNNTEEEDKVGGLKKAKKSNSSDLGASKLSLQLIDEDNK 708

Query: 248 VKNSKILMNEPLAINEELKL-----LHVLVCWSEKQIKNYDTQLCSSLPEVFKSSFLAKR 302
                  +N P    E +KL     + + + W+ +    YD     SLPEV K     K+
Sbjct: 709 T------INLPDNEAEAMKLPSSATVTIYLDWTPELSGMYDITCLESLPEVLKYGPTTKK 762

Query: 303 PQ-ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQY 361
            + E  SLY CLEAFL+EEPL PD+MW+CP C E RQASKKLDLWRLPE+LVIHLKRF Y
Sbjct: 763 ARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSY 822

Query: 362 SRYMKNKLETYVDFPVDNLDLSAYIAHAD-DKSYKYTLYAVSNHYGSMGGGHYTAFVHHG 420
           SR MK+KLET+V+FP+ +LDL+ Y+A+ +  +   Y LYA++NHYG MG GHYTA +   
Sbjct: 823 SRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLL 882

Query: 421 GD-QWYDFDDSRVYPISKEKIKSSAAYVLFYRR 452
            D +WY+FDDS +  I+++ +KS AAYVLFYRR
Sbjct: 883 DDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915


>AT4G31670.1 | Symbols: UBP18 | ubiquitin-specific protease 18 |
           chr4:15336007-15339506 REVERSE LENGTH=631
          Length = 631

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 6/152 (3%)

Query: 305 ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRY 364
           ++ SL +CL+ F  EE L  D+M+ C  C ++ +A K+L + R P IL I LKR+Q  RY
Sbjct: 326 DAGSLEECLDQFTAEEWLHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQGGRY 385

Query: 365 MKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGG---GHYTAFVHHGG 421
              KL   + FP + LDL+ Y++   D S  Y LYAV  H   +     GHY  ++    
Sbjct: 386 --GKLNKRISFP-ETLDLNPYMSEGGDGSDVYKLYAVIVHLDMLNASFFGHYICYIKDFC 442

Query: 422 DQWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
             WY  DDS +  +  E + S  AY+L Y R+
Sbjct: 443 GNWYRIDDSEIESVELEDVLSQRAYMLLYSRI 474


>AT5G46740.1 | Symbols: UBP21 | ubiquitin-specific protease 21 |
           chr5:18965410-18968492 REVERSE LENGTH=732
          Length = 732

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 7/170 (4%)

Query: 287 CSSLPEVFKSSF-LAKRPQESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDL 345
           C+S+   F+ S   +   ++  +L+K LE+F   E L  +D   C  CKE     K+L  
Sbjct: 302 CNSVSNTFEPSLGWSLEIEDVNTLWKALESFTCVEKL--EDQLTCDNCKEKVTKEKQLRF 359

Query: 346 WRLPEILVIHLKRFQYSRYMKNKLETYVDFPVDNLDLSAYIA--HADDKSYKYTLYAVSN 403
            +LP +   HLKRF        K+  +++FP++ LDLS +++  H  + S +Y LYA   
Sbjct: 360 DKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLE-LDLSPFMSSNHDPEVSTRYHLYAFVE 418

Query: 404 HYGSMGG-GHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRR 452
           H G     GHY+++V    + W++FDDS+V  IS+E++ S  AY+LFY R
Sbjct: 419 HIGIRATFGHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFYAR 468


>AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 |
           chr5:23470218-23473997 REVERSE LENGTH=859
          Length = 859

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 5/147 (3%)

Query: 308 SLYKCLEAFLQEEPL-GPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMK 366
           SL + L  F   E L     ++ C  CK+  +A K+L + + P +L +HLKRF+  R   
Sbjct: 266 SLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHR--S 323

Query: 367 NKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYG-SMGGGHYTAFVHHGGDQWY 425
            K++  VDF    +D+  +++   + + KYTLY V  HYG S   GHY  FV      WY
Sbjct: 324 EKIDRKVDF-TSAIDMKPFVSGPHEGNLKYTLYGVLVHYGRSSHSGHYACFVRTSSGMWY 382

Query: 426 DFDDSRVYPISKEKIKSSAAYVLFYRR 452
             DD+RV  +S++ + +  AY+LFY R
Sbjct: 383 SLDDNRVVQVSEKTVFNQKAYMLFYVR 409


>AT4G24560.1 | Symbols: UBP16 | ubiquitin-specific protease 16 |
           chr4:12679493-12684528 REVERSE LENGTH=1008
          Length = 1008

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 307 ASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMK 366
           ++L   L  F + E L  ++ + C  CK + +A KKL +   P +L I LKRFQ  ++  
Sbjct: 702 STLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKF-- 759

Query: 367 NKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGG---GHYTAFVHHGGDQ 423
            KL   + FP + LDL+ Y++   +KS+ Y LY V  H   M     GHY  ++ +  ++
Sbjct: 760 GKLNKLIRFP-ETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNK 817

Query: 424 WYDFDDSRVYPISKEKIKSSAAYVLFYRR 452
           WY  DDS V     E+I +  AY+LFY R
Sbjct: 818 WYKADDSTVVTSDVERILTKGAYMLFYAR 846


>AT2G24640.2 | Symbols: UBP19 | ubiquitin-specific protease 19 |
           chr2:10475613-10478388 REVERSE LENGTH=502
          Length = 502

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 305 ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRY 364
           ++ SL +CL+ F  +E L  D+++ C  C ++ +A K+L +   P IL I LKRFQ  R+
Sbjct: 162 DAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRF 221

Query: 365 MKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGG---GHYTAFVHHGG 421
              KL   + FP +  DL  Y++   + S  Y LYAV  H   +     GHY  +V    
Sbjct: 222 --GKLNKRISFP-ETFDLGPYMSGGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFR 278

Query: 422 DQWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
             WY  DDS V  +  E + S  AY+L Y RV
Sbjct: 279 GNWYRIDDSEVEKVELEDVLSQRAYMLLYSRV 310


>AT2G24640.1 | Symbols: UBP19 | ubiquitin-specific protease 19 |
           chr2:10475613-10479341 REVERSE LENGTH=672
          Length = 672

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 305 ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRY 364
           ++ SL +CL+ F  +E L  D+++ C  C ++ +A K+L +   P IL I LKRFQ  R+
Sbjct: 332 DAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRF 391

Query: 365 MKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGG---GHYTAFVHHGG 421
              KL   + FP +  DL  Y++   + S  Y LYAV  H   +     GHY  +V    
Sbjct: 392 --GKLNKRISFP-ETFDLGPYMSGGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFR 448

Query: 422 DQWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
             WY  DDS V  +  E + S  AY+L Y RV
Sbjct: 449 GNWYRIDDSEVEKVELEDVLSQRAYMLLYSRV 480


>AT1G17110.1 | Symbols: UBP15 | ubiquitin-specific protease 15 |
           chr1:5845816-5849889 REVERSE LENGTH=924
          Length = 924

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 6/150 (4%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
           SL   L  F + E L  ++M+ C  C  + +A K+L +   P IL I LKRFQ  RY   
Sbjct: 599 SLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRY--G 656

Query: 368 KLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGG---GHYTAFVHHGGDQW 424
           K+   + FP + LD+  ++    D    Y LYAV  H  ++     GHY ++V      W
Sbjct: 657 KINKCISFP-EMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNW 715

Query: 425 YDFDDSRVYPISKEKIKSSAAYVLFYRRVF 454
           Y  DDS ++P+   ++ S  AY+LFY R +
Sbjct: 716 YRIDDSEIHPVPMTQVMSEGAYMLFYMRSY 745


>AT1G17110.2 | Symbols: UBP15 | ubiquitin-specific protease 15 |
           chr1:5845816-5849889 REVERSE LENGTH=928
          Length = 928

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 6/150 (4%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
           SL   L  F + E L  ++M+ C  C  + +A K+L +   P IL I LKRFQ  RY   
Sbjct: 603 SLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRY--G 660

Query: 368 KLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSMGG---GHYTAFVHHGGDQW 424
           K+   + FP + LD+  ++    D    Y LYAV  H  ++     GHY ++V      W
Sbjct: 661 KINKCISFP-EMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNW 719

Query: 425 YDFDDSRVYPISKEKIKSSAAYVLFYRRVF 454
           Y  DDS ++P+   ++ S  AY+LFY R +
Sbjct: 720 YRIDDSEIHPVPMTQVMSEGAYMLFYMRSY 749


>AT4G17895.1 | Symbols: UBP20 | ubiquitin-specific protease 20 |
           chr4:9939914-9942698 FORWARD LENGTH=695
          Length = 695

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 7/170 (4%)

Query: 287 CSSLPEVF-KSSFLAKRPQESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDL 345
           C  + E + KS  L+   ++  +L   LE+F + E L  D+   C  C E     K+L L
Sbjct: 309 CDYVSETYEKSVGLSLEIEDVDTLGSALESFTRVEKL--DEQLTCDNCNEKVSKEKQLLL 366

Query: 346 WRLPEILVIHLKRFQYSRYMKNKLETYVDFPVDNLDLSAYIAHADDK--SYKYTLYAVSN 403
            +LP +   HLKRF+ +     K+  +V  P++ +DL  Y+ +  +   S KY LYA+  
Sbjct: 367 DKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLE-IDLQPYMRNIQENEVSTKYHLYALVE 425

Query: 404 HYG-SMGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRR 452
           H+G S+  GHY+++V      W+ FDDS+V  I ++ + S  +Y+LFY R
Sbjct: 426 HFGYSVAYGHYSSYVRSAPKIWHHFDDSKVTRIDEDMVLSQDSYILFYAR 475


>AT5G10790.1 | Symbols: UBP22 | ubiquitin-specific protease 22 |
           chr5:3410638-3412559 FORWARD LENGTH=557
          Length = 557

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 28/169 (16%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYS--RYM 365
           +L  CL+ F + E LGPD    C  C E R++SK++ + RLP +L +H+KRF++S  R  
Sbjct: 362 TLSGCLDFFTRSEKLGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHSLTRKT 421

Query: 366 KNKLETYVDFPVDNLDLSAYI--------------AHADDKSY----------KYTLYAV 401
             K+++Y+ +P   L++S Y+              A   +  Y          ++ ++AV
Sbjct: 422 SRKIDSYLQYPF-RLNMSPYLSSSIIGKRFGNRIFAFDGEGEYDSSSSSSPSAEFEIFAV 480

Query: 402 SNHYGSMGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFY 450
             H G +  GHY  ++   G  WY  DD+ +  + +E ++    Y+LFY
Sbjct: 481 VTHKGMLESGHYVTYLRLKG-LWYRCDDAWINEVEEEVVRGCECYMLFY 528


>AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |
           chr5:26157863-26161096 FORWARD LENGTH=731
          Length = 731

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 307 ASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMK 366
            SL + L  F   E L  ++ ++C  CK +++A KKL +   P IL + LKRFQ   +  
Sbjct: 486 GSLEEALAQFTAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSDNF-- 543

Query: 367 NKLETYVDFPVDNLDLSAYIAHADDKSYK-YTLYAVSNHYGSMG---GGHYTAFVHHGGD 422
            KL   + FP + LD+S Y++  +   +  Y+LYAV  H  +M     GHY  ++     
Sbjct: 544 GKLSKPIHFP-ELLDISPYMSDPNHGDHPVYSLYAVVVHLDAMSTLFSGHYVCYIKTLDG 602

Query: 423 QWYDFDDSRVYPISKEKIKSSAAYVLFYRR 452
            W+  DDS V+P+  E +    AY+L Y R
Sbjct: 603 DWFKIDDSNVFPVQLETVLLEGAYMLLYAR 632


>AT4G30890.3 | Symbols: UBP24 | ubiquitin-specific protease 24 |
           chr4:15036383-15038825 REVERSE LENGTH=551
          Length = 551

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 339 ASKKLDLWRLPEILVIHLKRFQYSRYMKNKLETYVDFPVD-NLDLSAYIAHADDKSYKYT 397
           ASK + + +L +I+++HL RF Y      KL   V FP++ NL+ S ++    ++S +Y 
Sbjct: 436 ASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRS-HLVSLSNESLRYE 494

Query: 398 LYAVSNHYG-SMGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
           L A   H+G     GHYT        QW  FDD+ V PI  + +    AYVLFY++V
Sbjct: 495 LVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQV 551


>AT4G30890.2 | Symbols: UBP24 | ubiquitin-specific protease 24 |
           chr4:15036383-15038825 REVERSE LENGTH=551
          Length = 551

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 339 ASKKLDLWRLPEILVIHLKRFQYSRYMKNKLETYVDFPVD-NLDLSAYIAHADDKSYKYT 397
           ASK + + +L +I+++HL RF Y      KL   V FP++ NL+ S ++    ++S +Y 
Sbjct: 436 ASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRS-HLVSLSNESLRYE 494

Query: 398 LYAVSNHYG-SMGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
           L A   H+G     GHYT        QW  FDD+ V PI  + +    AYVLFY++V
Sbjct: 495 LVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQV 551


>AT4G30890.1 | Symbols: UBP24 | ubiquitin-specific protease 24 |
           chr4:15036383-15038825 REVERSE LENGTH=551
          Length = 551

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 339 ASKKLDLWRLPEILVIHLKRFQYSRYMKNKLETYVDFPVD-NLDLSAYIAHADDKSYKYT 397
           ASK + + +L +I+++HL RF Y      KL   V FP++ NL+ S ++    ++S +Y 
Sbjct: 436 ASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRS-HLVSLSNESLRYE 494

Query: 398 LYAVSNHYG-SMGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRV 453
           L A   H+G     GHYT        QW  FDD+ V PI  + +    AYVLFY++V
Sbjct: 495 LVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQV 551


>AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2
           | chr1:1369306-1372290 REVERSE LENGTH=961
          Length = 961

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 13/130 (10%)

Query: 337 RQASKKLDLWRLPEILVIHLKRF-QYSRYMKNKLETYVDFPVDNLDLSAYIAH--ADDKS 393
           R A+KK+ + + P +L IHLKRF Q  R   +KL  +V F  + +DL  Y+    + +  
Sbjct: 830 RDATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFK-EVIDLRQYMDSRCSGEDP 888

Query: 394 YKYTLYAVSNHYGSMGGGHYTAFVHHG---------GDQWYDFDDSRVYPISKEKIKSSA 444
             Y L  +  H G+M GGHY A+V  G            WY+  D+ V  +S EK+  S 
Sbjct: 889 PVYRLAGLVEHSGTMRGGHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKVLHSE 948

Query: 445 AYVLFYRRVF 454
           AY+LFY R+F
Sbjct: 949 AYILFYERIF 958


>AT2G32780.1 | Symbols: UBP1, ATUBP1 | ubiquitin-specific protease 1 |
            chr2:13898431-13901870 REVERSE LENGTH=1083
          Length = 1083

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 17/133 (12%)

Query: 337  RQASKKLDLWRLPEILVIHLKRF-QYSRYMKNKLETYVDFPVDNLDLSAYIAH--ADDKS 393
            R A KK+ + + P +L IHLKRF Q +R   +KL  +VDF  + +DLS Y+    +++  
Sbjct: 952  RDARKKVLINKAPPVLTIHLKRFSQDARGRVSKLSGHVDFQ-EFIDLSKYMDTRCSEEDE 1010

Query: 394  YKYTLYAVSNHYGSMGGGHYTAFVHHGGDQ-------------WYDFDDSRVYPISKEKI 440
              Y L  +  H G+M  GHY +++  G  +             WY   DS+V P S E++
Sbjct: 1011 PVYRLAGLVEHLGAMSRGHYVSYIRGGHKERRDSDTKEPNSSIWYHASDSQVRPASLEEV 1070

Query: 441  KSSAAYVLFYRRV 453
              S AY+LFY R+
Sbjct: 1071 LRSEAYILFYERI 1083


>AT4G39910.1 | Symbols: ATUBP3, UBP3 | ubiquitin-specific protease 3
           | chr4:18511858-18514139 REVERSE LENGTH=371
          Length = 371

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 23/164 (14%)

Query: 304 QESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQY-- 361
           ++++S+  CL+ F   E L  +D ++C  C   ++A K++ + + P ILVIHLKRF+Y  
Sbjct: 207 EQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIE 266

Query: 362 --SRYMKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSM-GGGHYTAFVH 418
              RY   KL   V FP++ L LS  +    D   +Y+L+AV  H GS    GHY + V 
Sbjct: 267 QLGRY--KKLSYRVVFPLE-LKLSNTVEPYAD--VEYSLFAVVVHVGSGPNHGHYVSLV- 320

Query: 419 HGGDQWYDFDDSRVYPISKEKIK------------SSAAYVLFY 450
              + W  FDD  V  I +  ++            +   Y+LFY
Sbjct: 321 KSHNHWLFFDDENVEMIEESAVQTFFGSSQEYSSNTDHGYILFY 364


>AT2G22310.1 | Symbols: ATUBP4, UBP4 | ubiquitin-specific protease 4
           | chr2:9476733-9478825 REVERSE LENGTH=365
          Length = 365

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%)

Query: 304 QESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQY-- 361
           ++++S+  CL+ F   E L  +D ++C  C   ++A K++ + + P ILVIHLKRF+Y  
Sbjct: 202 EQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYME 261

Query: 362 --SRYMKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSM-GGGHYTAFVH 418
              RY   KL   V FP++ L LS  +    D   +Y+L+AV  H GS    GHY + V 
Sbjct: 262 QLGRY--KKLSYRVVFPLE-LKLSNTVDEYVD--IEYSLFAVVVHVGSGPNHGHYVSLV- 315

Query: 419 HGGDQWYDFDDSRVYPISKEKIKSSAAYVLF 449
              + W  FDD  V     E I+ SA    F
Sbjct: 316 KSHNHWLFFDDESV-----EIIEESAVQTFF 341


>AT2G22310.2 | Symbols: UBP4 | ubiquitin-specific protease 4 |
           chr2:9476733-9478825 REVERSE LENGTH=379
          Length = 379

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 16/151 (10%)

Query: 304 QESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQY-- 361
           ++++S+  CL+ F   E L  +D ++C  C   ++A K++ + + P ILVIHLKRF+Y  
Sbjct: 216 EQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYME 275

Query: 362 --SRYMKNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGSM-GGGHYTAFVH 418
              RY   KL   V FP++ L LS  +    D   +Y+L+AV  H GS    GHY + V 
Sbjct: 276 QLGRY--KKLSYRVVFPLE-LKLSNTVDEYVD--IEYSLFAVVVHVGSGPNHGHYVSLV- 329

Query: 419 HGGDQWYDFDDSRVYPISKEKIKSSAAYVLF 449
              + W  FDD  V     E I+ SA    F
Sbjct: 330 KSHNHWLFFDDESV-----EIIEESAVQTFF 355


>AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 |
           chr3:4811953-4815210 REVERSE LENGTH=661
          Length = 661

 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 5/150 (3%)

Query: 305 ESASLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRY 364
           +S+S+ + L+ F Q E L  ++ + C  C++   A K++ + + P ILVI LKRF     
Sbjct: 188 QSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRF--GGI 245

Query: 365 MKNKLETYVDFPVDNLDLSAYIAHAD-DKSYKYTLYAVSNHYG-SMGGGHYTAFVHHGGD 422
              K++  + F  + L LS +++ A  D   +Y L+ +  H G S   GHY A+V     
Sbjct: 246 FGGKIDKAISFG-EILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPESGHYYAYVKDSLG 304

Query: 423 QWYDFDDSRVYPISKEKIKSSAAYVLFYRR 452
           +WY  +DS V   + +++ S  AY+LF+ R
Sbjct: 305 RWYCCNDSFVSLSTLQEVLSEKAYILFFSR 334


>AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 |
           chr3:3761758-3770290 REVERSE LENGTH=1114
          Length = 1114

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 16/146 (10%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
            +Y   + +++ E L  D+ ++  G  + + A K +     P +L + LKRF+Y  +M++
Sbjct: 343 DVYASFDKYVEVERLEGDNKYHAEG-HDLQDAKKGVLFIDFPPVLQLQLKRFEYD-FMRD 400

Query: 368 ---KLETYVDFPVDNLDL----SAYIAHADDKSYK--YTLYAVSNHYGSMGGGHYTAFVH 418
              K+    +FP+  LDL      Y++   DKS +  YTL++V  H G + GGHY AF+ 
Sbjct: 401 TMVKINDRYEFPL-QLDLDREDGRYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYYAFIR 459

Query: 419 HG-GDQWYDFDDSRVYPISKEKIKSS 443
               DQWY FDD RV   +KE +K +
Sbjct: 460 PTLSDQWYKFDDERV---TKEDVKRA 482


>AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 |
           chr3:3761758-3770290 REVERSE LENGTH=1115
          Length = 1115

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 16/146 (10%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
            +Y   + +++ E L  D+ ++  G  + + A K +     P +L + LKRF+Y  +M++
Sbjct: 344 DVYASFDKYVEVERLEGDNKYHAEG-HDLQDAKKGVLFIDFPPVLQLQLKRFEYD-FMRD 401

Query: 368 ---KLETYVDFPVDNLDL----SAYIAHADDKSYK--YTLYAVSNHYGSMGGGHYTAFVH 418
              K+    +FP+  LDL      Y++   DKS +  YTL++V  H G + GGHY AF+ 
Sbjct: 402 TMVKINDRYEFPL-QLDLDREDGRYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYYAFIR 460

Query: 419 HG-GDQWYDFDDSRVYPISKEKIKSS 443
               DQWY FDD RV   +KE +K +
Sbjct: 461 PTLSDQWYKFDDERV---TKEDVKRA 483


>AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2019545-2027834 REVERSE LENGTH=1116
          Length = 1116

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 16/146 (10%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
            +Y   + +++ E L  D+ ++  G    + A K +     P +L + LKRF+Y  +M++
Sbjct: 345 DVYASFDKYVEVERLEGDNKYHAEGHG-LQDAKKGVLFIDFPPVLQLQLKRFEYD-FMRD 402

Query: 368 ---KLETYVDFPVDNLDL----SAYIAHADDKSYK--YTLYAVSNHYGSMGGGHYTAFVH 418
              K+    +FP++ LDL      Y++   D+S +  YTL++V  H G + GGHY AF+ 
Sbjct: 403 TMVKINDRYEFPLE-LDLDREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIR 461

Query: 419 HG-GDQWYDFDDSRVYPISKEKIKSS 443
               DQWY FDD RV   +KE +K +
Sbjct: 462 PTLSDQWYKFDDERV---TKEDLKRA 484


>AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2019545-2027834 REVERSE LENGTH=1115
          Length = 1115

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 16/146 (10%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN 367
            +Y   + +++ E L  D+ ++  G    + A K +     P +L + LKRF+Y  +M++
Sbjct: 344 DVYASFDKYVEVERLEGDNKYHAEGHG-LQDAKKGVLFIDFPPVLQLQLKRFEYD-FMRD 401

Query: 368 ---KLETYVDFPVDNLDL----SAYIAHADDKSYK--YTLYAVSNHYGSMGGGHYTAFVH 418
              K+    +FP++ LDL      Y++   D+S +  YTL++V  H G + GGHY AF+ 
Sbjct: 402 TMVKINDRYEFPLE-LDLDREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIR 460

Query: 419 HG-GDQWYDFDDSRVYPISKEKIKSS 443
               DQWY FDD RV   +KE +K +
Sbjct: 461 PTLSDQWYKFDDERV---TKEDLKRA 483


>AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2020682-2027834 REVERSE LENGTH=985
          Length = 985

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 16/145 (11%)

Query: 309 LYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKRFQYSRYMKN- 367
           +Y   + +++ E L  D+ ++  G    + A K +     P +L + LKRF+Y  +M++ 
Sbjct: 346 VYASFDKYVEVERLEGDNKYHAEGHG-LQDAKKGVLFIDFPPVLQLQLKRFEYD-FMRDT 403

Query: 368 --KLETYVDFPVDNLDL----SAYIAHADDKSYK--YTLYAVSNHYGSMGGGHYTAFVHH 419
             K+    +FP++ LDL      Y++   D+S +  YTL++V  H G + GGHY AF+  
Sbjct: 404 MVKINDRYEFPLE-LDLDREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRP 462

Query: 420 G-GDQWYDFDDSRVYPISKEKIKSS 443
              DQWY FDD RV   +KE +K +
Sbjct: 463 TLSDQWYKFDDERV---TKEDLKRA 484


>AT3G49600.1 | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specific
           protease 26 | chr3:18380942-18386662 REVERSE LENGTH=1067
          Length = 1067

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 308 SLYKCLEAFLQEEPLGPDDMWYCPGCKEHRQASKKLDLWRLPEILVIHLKR--FQYSRYM 365
           SL   L  +L  E L  D+ ++C  C     A++ + L  LP ++   LKR  F      
Sbjct: 253 SLDASLNDYLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVITFQLKRCIFLPKTTA 312

Query: 366 KNKLETYVDFPVDNLDLSAYIAHADDKSYKYTLYAVSNHYGS-MGGGHYTAFVH-HGGDQ 423
           K K+ +   FP   LD+ + +A +      Y L AV  H GS +  GHY A +       
Sbjct: 313 KKKITSSFSFP-QVLDMGSRLAESSQNKLTYDLSAVLIHKGSAVNSGHYVAHIKDEKTGL 371

Query: 424 WYDFDDSRVYPISKEKIKSSAA 445
           W++FDD  V  + K     +++
Sbjct: 372 WWEFDDEHVSELGKRPCNEASS 393


>AT4G22285.1 | Symbols:  | Ubiquitin C-terminal hydrolases
           superfamily protein | chr4:11779063-11781898 REVERSE
           LENGTH=541
          Length = 541

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 349 PEILVIHLKRFQYSRYMKNKLETYVDFPVDNLDLSAYI------AHADDKSYKYTLYAVS 402
           P  L+ H+ RF+ + + K K  T V+FPV +++L  YI         ++   KY L A  
Sbjct: 428 PRYLMFHMVRFKKNNFFKEKNPTLVNFPVKDMELRDYIPSLPRAPEGENVCSKYNLIANI 487

Query: 403 NHYGSMGGGHYTAFVHHGGDQ-WYDFDDSRVYPISKEKIKSSAAYVLFY 450
            H G    G++  FV     + WY+  D  V     + ++ S AY+  Y
Sbjct: 488 VHDGKPEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEAYMQIY 536


>AT4G22350.1 | Symbols:  | Ubiquitin C-terminal hydrolases
           superfamily protein | chr4:11804073-11806939 REVERSE
           LENGTH=510
          Length = 510

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 349 PEILVIHLKRFQYSRYMKNKLETYVDFPVDNLDLSAYI------AHADDKSYKYTLYAVS 402
           P  L+ H+ RF+ + + K K  T V+FPV +++L  YI         ++   KY L A  
Sbjct: 397 PRYLMFHMVRFKKNNFFKEKNPTLVNFPVKDMELRDYIPSLPRAPEGENVCSKYNLIANI 456

Query: 403 NHYGSMGGGHYTAFVHHGGDQ-WYDFDDSRVYPISKEKIKSSAAYVLFY 450
            H G    G++  FV     + WY+  D  V     + ++ S AY+  Y
Sbjct: 457 VHDGKPEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEAYMQIY 505


>AT4G22350.2 | Symbols:  | Ubiquitin C-terminal hydrolases
           superfamily protein | chr4:11804073-11806939 REVERSE
           LENGTH=539
          Length = 539

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 349 PEILVIHLKRFQYSRYMKNKLETYVDFPVDNLDLSAYI------AHADDKSYKYTLYAVS 402
           P  L+ H+ RF+ + + K K  T V+FPV +++L  YI         ++   KY L A  
Sbjct: 426 PRYLMFHMVRFKKNNFFKEKNPTLVNFPVKDMELRDYIPSLPRAPEGENVCSKYNLIANI 485

Query: 403 NHYGSMGGGHYTAFVHHGGDQ-WYDFDDSRVYPISKEKIKSSAAYVLFY 450
            H G    G++  FV     + WY+  D  V     + ++ S AY+  Y
Sbjct: 486 VHDGKPEDGYFRVFVQRKSQELWYEMQDLHVAETLPQMVELSEAYMQIY 534


>AT4G39370.1 | Symbols: UBP27 | ubiquitin-specific protease 27 |
           chr4:18306392-18308625 FORWARD LENGTH=494
          Length = 494

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 32/145 (22%)

Query: 341 KKLDLWRLPEILVIHLKRFQYSRYMKNKLETYVDFP-VDNLDL----------------- 382
           K+L + R P++L I ++R  ++ + + KL  ++ FP V NL L                 
Sbjct: 350 KQLIIARFPKLLCIQVQRASFNMFEEFKLSGHIAFPLVLNLSLFTPSSIGVNIEERIEMS 409

Query: 383 SAYIAHADDKSYK-YTLYAVSNHYGSMGGGHYTAF-------------VHHGGDQWYDFD 428
           S Y      K++  Y L  V  H+G  G GHYT +                    W+   
Sbjct: 410 SEYQKPEASKNHGMYRLVTVVEHFGRTGSGHYTVYRSVRVFSQEEEEEDCDEDLSWFSIS 469

Query: 429 DSRVYPISKEKIKSSAAYVLFYRRV 453
           DS V  +S+  +  + A +LFY R+
Sbjct: 470 DSEVCRVSESDVLGAEASLLFYERL 494