Miyakogusa Predicted Gene

Lj3g3v1295850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1295850.1 tr|Q55GJ4|Q55GJ4_DICDI Sec20 family protein
OS=Dictyostelium discoideum GN=sec20 PE=4
SV=1,31.48,3e-16,Sec20,Sec20; SUBFAMILY NOT NAMED,NULL;
BNIP1-RELATED,NULL; seg,NULL,CUFF.42411.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein | chr3:882...   291   3e-79

>AT3G24315.1 | Symbols: AtSec20 | Sec20 family protein |
           chr3:8820599-8822445 REVERSE LENGTH=293
          Length = 293

 Score =  291 bits (746), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/296 (56%), Positives = 197/296 (66%), Gaps = 7/296 (2%)

Query: 1   MDXXXXXXXXXXREWDEACGKTQLHIKAIADYGKS--GRPKDEINSLARLNGMAQDGXXX 58
           MD          REW+EA  KT  HI +I  YGKS  G   +E  SL RLNG+AQDG   
Sbjct: 1   MDEVVVEVEKTKREWEEAYEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSL 60

Query: 59  XXXXXXXXXXXXPQLPTEKEVESARVLLESWKTLSQHLRLSLRNANLQAKANLRKAAQXX 118
                       PQLP++ +V+S + LLE+WK     LR++LR+ANLQAK N+RKAAQ  
Sbjct: 61  LNSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEE 120

Query: 119 XXXXXXXXXXSTIRRRNLQTKAGMTSAAESITDSLRRTRQLMVQEVERNTSTLMTLDEST 178
                     ST+ RR  Q  AG+TS AESIT+SLRR+RQLMVQEVER+T+TL+  DEST
Sbjct: 121 RELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDEST 180

Query: 179 GVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRVIIGLGFLLFSLAVLYVVSKRIGLL 238
           GVLKKAESEYKGHRSLL RTRNLLSTMQRQDVIDR+I+ +GF LF  AV+YVVSKRIG+L
Sbjct: 181 GVLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGIL 240

Query: 239 TLQRKVTEAIKAGVVGQADLRPQAVADD-MNLHQVRDDH-VHNTEAPLEQRIHDEL 292
            LQR  T AIKA + G+A      V DD M L Q  D + V     PL+QR+HDEL
Sbjct: 241 KLQRMATAAIKAQLAGKA---ANGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293