Miyakogusa Predicted Gene

Lj3g3v1204550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1204550.1 Non Chatacterized Hit- tr|D8TQG4|D8TQG4_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,25.48,0.0003,seg,NULL,CUFF.42351.1
         (335 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22340.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   319   2e-87
AT5G22340.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   263   2e-70

>AT5G22340.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 58 Blast hits to 58 proteins in 20
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr5:7394509-7396554 FORWARD
           LENGTH=323
          Length = 323

 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/272 (58%), Positives = 195/272 (71%), Gaps = 8/272 (2%)

Query: 65  EEEVLQMFFKERELNGDFISKASDILWLRKFRSSVDSDISNLTNNNAASQQIELEQSIES 124
           EE+VLQMF K+RE NGDFISK SD LWL++   S+D     + +N A+S  +EL+ + ES
Sbjct: 56  EEDVLQMFMKDREENGDFISKVSDRLWLKEILESID-----VNSNGASSSAVELDDTRES 110

Query: 125 NSDNGS--ASGFLKLSTTQEWVLGD-ESAPRNKRMTAKMLQDSSERRKKLNILQYESLKR 181
             D      SGFLKL  TQEW+  + +SAP NK+  AK L+D SERRKK N L+YE+LKR
Sbjct: 111 LIDGADDDESGFLKLKPTQEWIGWESDSAPMNKKALAKALRDDSERRKKFNFLKYEALKR 170

Query: 182 ELLLVSVAVGLACSGYCLLVFSVQAAISYAIGVXXXXXXXXXXXQHADNLSSESVPQIFR 241
           EL+ +S+ +G  CSGYCLL  SVQAA+SYA+GV            +AD LS E+VP IF 
Sbjct: 171 ELMYLSIVIGTGCSGYCLLALSVQAAVSYAVGVLFSCLYLQLLYGYADGLSREAVPDIFL 230

Query: 242 XXXXXXIGIRSEDLQDSLERSIKGCSMALSSPRLVIPATIYGLWALSHRYFTNDFFDFQL 301
                 IGIRSEDL+D + R+I+G  MALSSPRLVIPA IYGLW LSH+YF ND FDFQ+
Sbjct: 231 KKKSKKIGIRSEDLEDFVVRTIRGSGMALSSPRLVIPAAIYGLWILSHKYFQNDLFDFQI 290

Query: 302 VPAMFGMFVYKAAALVQVYRDNEDLQLVFPEN 333
           VPAM G+FVYKAA LVQVYRDN+DLQ +FP++
Sbjct: 291 VPAMVGLFVYKAATLVQVYRDNQDLQFIFPDD 322


>AT5G22340.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 43 Blast hits to 43 proteins in 15
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 42; Viruses - 0; Other Eukaryotes - 1
           (source: NCBI BLink). | chr5:7394509-7396609 FORWARD
           LENGTH=340
          Length = 340

 Score =  263 bits (671), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/240 (55%), Positives = 165/240 (68%), Gaps = 8/240 (3%)

Query: 65  EEEVLQMFFKERELNGDFISKASDILWLRKFRSSVDSDISNLTNNNAASQQIELEQSIES 124
           EE+VLQMF K+RE NGDFISK SD LWL++   S+D     + +N A+S  +EL+ + ES
Sbjct: 56  EEDVLQMFMKDREENGDFISKVSDRLWLKEILESID-----VNSNGASSSAVELDDTRES 110

Query: 125 NSDNGS--ASGFLKLSTTQEWVLGD-ESAPRNKRMTAKMLQDSSERRKKLNILQYESLKR 181
             D      SGFLKL  TQEW+  + +SAP NK+  AK L+D SERRKK N L+YE+LKR
Sbjct: 111 LIDGADDDESGFLKLKPTQEWIGWESDSAPMNKKALAKALRDDSERRKKFNFLKYEALKR 170

Query: 182 ELLLVSVAVGLACSGYCLLVFSVQAAISYAIGVXXXXXXXXXXXQHADNLSSESVPQIFR 241
           EL+ +S+ +G  CSGYCLL  SVQAA+SYA+GV            +AD LS E+VP IF 
Sbjct: 171 ELMYLSIVIGTGCSGYCLLALSVQAAVSYAVGVLFSCLYLQLLYGYADGLSREAVPDIFL 230

Query: 242 XXXXXXIGIRSEDLQDSLERSIKGCSMALSSPRLVIPATIYGLWALSHRYFTNDFFDFQL 301
                 IGIRSEDL+D + R+I+G  MALSSPRLVIPA IYGLW LSH+YF ND FDFQ 
Sbjct: 231 KKKSKKIGIRSEDLEDFVVRTIRGSGMALSSPRLVIPAAIYGLWILSHKYFQNDLFDFQF 290