Miyakogusa Predicted Gene

Lj3g3v1193490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1193490.1 Non Chatacterized Hit- tr|I1M4B4|I1M4B4_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.73,0,seg,NULL;
FAD/NAD(P)-binding domain,NULL; Lycopene_cycl,Lycopene cyclase-type,
FAD-binding; no descr,CUFF.42348.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10230.1 | Symbols: LYC | lycopene cyclase | chr3:3164340-316...   306   9e-84
AT3G10230.2 | Symbols: LYC | lycopene cyclase | chr3:3164340-316...   215   3e-56
AT5G57030.1 | Symbols: LUT2 | Lycopene beta/epsilon cyclase prot...   157   6e-39

>AT3G10230.1 | Symbols: LYC | lycopene cyclase |
           chr3:3164340-3165845 REVERSE LENGTH=501
          Length = 501

 Score =  306 bits (785), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 137/251 (54%), Positives = 187/251 (74%)

Query: 58  FLDMMPEYQPEALDFDLPWCHPSDRARFDVIIIGAGPAGIRLAEQVSRYGIKVCCVDPDP 117
            LD++PE + E LDF+LP    S     D+ I+G GPAG+ +A+QVS  G+ VC +DP P
Sbjct: 56  LLDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSP 115

Query: 118 LSIWPNNYGVWCDEFESLGLEDCLDKTWAMASVHIDEGKTKYLDRCYGRVSRKKLKERLV 177
             IWPNNYGVW DEFE++ L DCLD TW+ A V++DEG  K L R YGRV+RK+LK +++
Sbjct: 116 KLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKML 175

Query: 178 EGCVSNGVRFHKAKAWKIVHQEFESMLLCDDGTELKGSLIVDASGFGSDFVKYDKVRNCG 237
           + C++NGV+FH++K   +VH+E  S ++C DG +++ S+++DA+GF    V+YDK  N G
Sbjct: 176 QKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFSRCLVQYDKPYNPG 235

Query: 238 CQIAHGVLAEVEDHPFDLDKMVLMDWRDSHLGNEPNLRASNLKVPTFLYAMPFSSNLVFL 297
            Q+A+G++AEV+ HPFD+DKMV MDWRD HL + P L+  N K+PTFLYAMPFSSN +FL
Sbjct: 236 YQVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIFL 295

Query: 298 EETSLVSRPVL 308
           EETSLV+RP L
Sbjct: 296 EETSLVARPGL 306


>AT3G10230.2 | Symbols: LYC | lycopene cyclase |
           chr3:3164340-3165449 REVERSE LENGTH=369
          Length = 369

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 134/174 (77%)

Query: 135 LGLEDCLDKTWAMASVHIDEGKTKYLDRCYGRVSRKKLKERLVEGCVSNGVRFHKAKAWK 194
           + L DCLD TW+ A V++DEG  K L R YGRV+RK+LK ++++ C++NGV+FH++K   
Sbjct: 1   MDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTN 60

Query: 195 IVHQEFESMLLCDDGTELKGSLIVDASGFGSDFVKYDKVRNCGCQIAHGVLAEVEDHPFD 254
           +VH+E  S ++C DG +++ S+++DA+GF    V+YDK  N G Q+A+G++AEV+ HPFD
Sbjct: 61  VVHEEANSTVVCSDGVKIQASVVLDATGFSRCLVQYDKPYNPGYQVAYGIVAEVDGHPFD 120

Query: 255 LDKMVLMDWRDSHLGNEPNLRASNLKVPTFLYAMPFSSNLVFLEETSLVSRPVL 308
           +DKMV MDWRD HL + P L+  N K+PTFLYAMPFSSN +FLEETSLV+RP L
Sbjct: 121 VDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIFLEETSLVARPGL 174


>AT5G57030.1 | Symbols: LUT2 | Lycopene beta/epsilon cyclase protein
           | chr5:23077398-23079818 FORWARD LENGTH=524
          Length = 524

 Score =  157 bits (398), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 135/229 (58%), Gaps = 12/229 (5%)

Query: 85  FDVIIIGAGPAGIRLAEQVSRYGIKVCCVDPD-PLSIWPNNYGVWCDEFESLGLEDCLDK 143
            D+++IG GPAG+ LA + ++ G+KV  + PD P +   NNYGVW DEF  LGL+ C++ 
Sbjct: 109 LDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFT---NNYGVWEDEFNDLGLQKCIEH 165

Query: 144 TWAMASVHIDEGKTKYLDRCYGRVSRKKLKERLVEGCVSNGVRFHKAKAWKIVH-QEFES 202
            W    V++D+ K   + R YGRVSR+ L E L+  CV +GV +  +K   I    +   
Sbjct: 166 VWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLR 225

Query: 203 MLLCDDGTELKGSLIVDASGFGS-DFVKYD--KVRNCGCQIAHGVLAEVEDHPFDLDKMV 259
           ++ CDD   +   L   ASG  S   ++Y+    R C  Q A+GV  EVE+ P+D D+MV
Sbjct: 226 LVACDDNNVIPCRLATVASGAASGKLLQYEVGGPRVC-VQTAYGVEVEVENSPYDPDQMV 284

Query: 260 LMDWRDSHLGNEPNLRASNLKVPTFLYAMPFSSNLVFLEETSLVSRPVL 308
            MD+RD    NE  +R+   + PTFLYAMP + + +F EET L S+ V+
Sbjct: 285 FMDYRD--YTNE-KVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVM 330