Miyakogusa Predicted Gene

Lj3g3v1182350.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1182350.2 CUFF.42334.2
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22400.1 | Symbols:  | Rho GTPase activating protein with PAK...   452   e-127
AT3G11490.1 | Symbols:  | rac GTPase activating protein | chr3:3...   419   e-117
AT1G08340.1 | Symbols:  | Rho GTPase activating protein with PAK...   379   e-105
AT2G46710.1 | Symbols:  | Rho GTPase activating protein with PAK...   373   e-103
AT4G03100.1 | Symbols:  | Rho GTPase activating protein with PAK...   366   e-101

>AT5G22400.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr5:7423050-7425335
           REVERSE LENGTH=466
          Length = 466

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 285/403 (70%), Gaps = 35/403 (8%)

Query: 31  LVTLFRKSFVAAFKSGRKHLCAMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPDVPRRP 90
           LV +FR+S ++  KS R+ LC+M+IG PTNVRHVAHVTFDRFNGFLGLPVEFEP+VPRR 
Sbjct: 94  LVAIFRRSLISC-KSNRRELCSMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRA 152

Query: 91  PSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNSQEEN 150
           PSASATVFGVSTESMQLSYDSRGN VPTILLLMQ  LY+QGGLQ EGIFR+  +NS+EE 
Sbjct: 153 PSASATVFGVSTESMQLSYDSRGNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEA 212

Query: 151 VRDQLNMGLIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETEEECVELARNLP 210
           VR+QLN G IPE IDVHCLAGLIKAWFRELPT +LDSLSPEQVMQC+TEEE VEL R LP
Sbjct: 213 VREQLNRGFIPERIDVHCLAGLIKAWFRELPTSVLDSLSPEQVMQCQTEEENVELVRLLP 272

Query: 211 HTEAALLDWAINLMADVVQQEHVNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLK 270
            TEAALLDWAINLMADVVQ EH+NKMN+RNIAMVFAPNMTQM DP TALMYAVQVMNFLK
Sbjct: 273 PTEAALLDWAINLMADVVQYEHLNKMNSRNIAMVFAPNMTQMDDPLTALMYAVQVMNFLK 332

Query: 271 SLILRTLQERKDSVVESHPKLYPGPSDENGNRTLLESCQQDTMXXXXXXXXXXXXXXXXX 330
           +LI +TL+ER+DSVVE        PSDE+G+++  +S   +T                  
Sbjct: 333 TLIEKTLRERQDSVVEQAHAFPLEPSDESGHQSPSQSLAFNTSEQSEETQSDNI------ 386

Query: 331 XCSPEPLQNNTSTGGESDSLVSSSENTICNEDLYCEFPPKGNMGKGKPAQSSSSNARKGT 390
               E  +N +S+   SD L  + EN  C +        + + GK +  + S S      
Sbjct: 387 ----ENAENQSSSSEISDEL--TLENNACEQR-------ETDFGKYRTGRLSDS------ 427

Query: 391 KKTRGKQPVVDQTVPAE-----KRGMRSASNTDSRYERVEAWR 428
                +Q V++   PA+      +G+ + S   SR ER EAWR
Sbjct: 428 ----SQQVVLNLDPPAQWPVGRTKGLTNLSRVGSRVERTEAWR 466


>AT3G11490.1 | Symbols:  | rac GTPase activating protein |
           chr3:3617523-3619567 REVERSE LENGTH=435
          Length = 435

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/273 (72%), Positives = 235/273 (86%), Gaps = 1/273 (0%)

Query: 31  LVTLFRKSFVAAFKSGRKHLCAMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPDVPRRP 90
           LV+  R+S +     G + LC+M+IG PT+VRHVAHVTFDRF+GFLGLPVEFEP+VPRR 
Sbjct: 70  LVSAIRRSVIGGC-VGEEDLCSMEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRA 128

Query: 91  PSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNSQEEN 150
           PSASATVFGVSTESMQLSYD+RGN VPTILL+MQ HLY++GGL+VEGIFRIN +N QEE 
Sbjct: 129 PSASATVFGVSTESMQLSYDTRGNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEEY 188

Query: 151 VRDQLNMGLIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETEEECVELARNLP 210
           +R++LN G+IP+ IDVHCLA LIKAWFRELP+G+LDSLSPEQVM+ E+E+ECVEL R LP
Sbjct: 189 IREELNKGIIPDNIDVHCLASLIKAWFRELPSGVLDSLSPEQVMESESEDECVELVRLLP 248

Query: 211 HTEAALLDWAINLMADVVQQEHVNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLK 270
            TEA+LLDWAINLMADVV+ E +NKMNARNIAMVFAPNMTQM DP TALMYAVQVMNFLK
Sbjct: 249 STEASLLDWAINLMADVVEMEQLNKMNARNIAMVFAPNMTQMLDPLTALMYAVQVMNFLK 308

Query: 271 SLILRTLQERKDSVVESHPKLYPGPSDENGNRT 303
           +LI++TL++RK+S  +  P   P P D NG+++
Sbjct: 309 TLIVKTLKDRKESRDKLVPASNPSPRDHNGDQS 341


>AT1G08340.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr1:2631308-2632669
           FORWARD LENGTH=331
          Length = 331

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 203/231 (87%)

Query: 53  MDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPDVPRRPPSASATVFGVSTESMQLSYDSR 112
           MDIG PTN+RHVAHVTFDRF+GFLGLP EFEPDVPR+ PSASATVFGVSTESMQLSYDSR
Sbjct: 1   MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSASATVFGVSTESMQLSYDSR 60

Query: 113 GNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNSQEENVRDQLNMGLIPEGIDVHCLAGL 172
           GN VP ILLL+Q  LY QGGLQ EG+FRI  +NS+EE VR+QLN G+IP+GIDVHCLAGL
Sbjct: 61  GNCVPVILLLLQSRLYDQGGLQAEGVFRITGENSEEEFVREQLNKGIIPDGIDVHCLAGL 120

Query: 173 IKAWFRELPTGILDSLSPEQVMQCETEEECVELARNLPHTEAALLDWAINLMADVVQQEH 232
           IKAWFRELP G+LD L  EQVMQCE++E+ V++ R LP TEA+LL+WAINLMADV+Q EH
Sbjct: 121 IKAWFRELPRGVLDPLPSEQVMQCESDEDFVKVVRLLPQTEASLLNWAINLMADVIQFEH 180

Query: 233 VNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKSLILRTLQERKDS 283
           VNKMN+RN+A+VFAPNM+QMADP TALMYAVQVM  LKSL  +T++ER+ S
Sbjct: 181 VNKMNSRNLALVFAPNMSQMADPLTALMYAVQVMKLLKSLTEKTVREREAS 231


>AT2G46710.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr2:19192105-19194656
           FORWARD LENGTH=455
          Length = 455

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/256 (69%), Positives = 208/256 (81%), Gaps = 3/256 (1%)

Query: 31  LVTLFRKSFV--AAFKSGRKHLCA-MDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPDVP 87
           L  + RKS V   A + G   + A MDIG PT V+HV+HVTFDRFNGFLGLP E EP+VP
Sbjct: 78  LAAVLRKSLVMSCAMERGEDDVVASMDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVP 137

Query: 88  RRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNSQ 147
            R PSAS +VFGVS +SMQ SYD RGNSVPTILL MQ+ LY +GGL+ EGIFRINPDN +
Sbjct: 138 PRAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGK 197

Query: 148 EENVRDQLNMGLIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETEEECVELAR 207
           EE+VR QLN G++P GIDVHCLAGLIKAWFRELPTG+LD L+PEQVM+C TEE+C  L  
Sbjct: 198 EEHVRRQLNCGVVPRGIDVHCLAGLIKAWFRELPTGVLDVLTPEQVMRCNTEEDCSRLVI 257

Query: 208 NLPHTEAALLDWAINLMADVVQQEHVNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMN 267
            LP  E+A+LDWAI LMADVV+ E  NKMNARN+AMVFAPNMTQMADP TAL++AVQVMN
Sbjct: 258 LLPPVESAILDWAIGLMADVVEHEQFNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMN 317

Query: 268 FLKSLILRTLQERKDS 283
           FLK+LIL  L+ER+++
Sbjct: 318 FLKTLILMNLKERENA 333


>AT4G03100.1 | Symbols:  | Rho GTPase activating protein with
           PAK-box/P21-Rho-binding domain | chr4:1374361-1375913
           FORWARD LENGTH=430
          Length = 430

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/268 (65%), Positives = 211/268 (78%), Gaps = 11/268 (4%)

Query: 31  LVTLFRKSFVAAFKSGRKH-----------LCAMDIGSPTNVRHVAHVTFDRFNGFLGLP 79
           L+T  RKS V+     R+            +  M+IG PTNVRH+ HVTFDRF+GFLGLP
Sbjct: 45  LLTALRKSVVSCRVDNRQDDGGVGGGISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGLP 104

Query: 80  VEFEPDVPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIF 139
            E + ++P R PSAS +VFGVS ESMQ SYD +GNSVPTILLLMQ  LY+Q GL+ EGIF
Sbjct: 105 HELQVEIPCRVPSASVSVFGVSAESMQCSYDEKGNSVPTILLLMQERLYSQQGLKAEGIF 164

Query: 140 RINPDNSQEENVRDQLNMGLIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETE 199
           RINP+NSQEE+VRDQLN G++PE IDVHCLAGLIKAWFRELP+G+LD LSPE+V+ C TE
Sbjct: 165 RINPENSQEEHVRDQLNRGIVPENIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLNCNTE 224

Query: 200 EECVELARNLPHTEAALLDWAINLMADVVQQEHVNKMNARNIAMVFAPNMTQMADPFTAL 259
           +E VEL + L  TE+ALL+WA++LMADVV++E  NKMNARNIAMVFAPNMTQM DP TAL
Sbjct: 225 DESVELIKQLKPTESALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMTDPLTAL 284

Query: 260 MYAVQVMNFLKSLILRTLQERKDSVVES 287
           M+AVQVMN LK+LI +TL ER+++   S
Sbjct: 285 MHAVQVMNLLKTLITKTLAEREENATGS 312