Miyakogusa Predicted Gene

Lj3g3v1145920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1145920.1 Non Chatacterized Hit- tr|A9NPB9|A9NPB9_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,59.65,2e-19,Ribosomal_60s,Ribosomal protein 60S; seg,NULL; 60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL,CUFF.42299.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family | ...    86   4e-18
AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family | ...    86   4e-18
AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family | ...    86   4e-18
AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family | ...    86   4e-18
AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family | ...    83   3e-17
AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family | ...    81   1e-16
AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family | ...    74   2e-14
AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family | ...    71   2e-13
AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family | ...    68   1e-12
AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family | ...    65   7e-12

>AT2G27710.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AAYLLAVL G +SP++ D+K ILGSVG + E+  I+LLL EVKGKD AE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AAYLLAVL G +SP++ D+K ILGSVG + E+  I+LLL EVKGKD AE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=115
          Length = 115

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AAYLLAVL G +SP++ D+K ILGSVG + E+  I+LLL EVKGKD AE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27710.4 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11816929-11817670 FORWARD LENGTH=98
          Length = 98

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AAYLLAVL G +SP++ D+K ILGSVG + E+  I+LLL EVKGKD AE+IA+GRE
Sbjct: 1  MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27720.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11818696-11819370 FORWARD LENGTH=115
          Length = 115

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 52/62 (83%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AA+LLAVL G +SP+  D+K+ILGSVG + E+  I+LLL EVKGKD AE+IA+GRE
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT3G44590.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 53/62 (85%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV AA+LLAVLGGN++PSA ++K+I+G+VG D + + I+LLL EV GKD AE+IASGRE
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT3G44590.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:16163983-16164658 FORWARD LENGTH=111
          Length = 111

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 53/62 (85%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV AA+LLAVLGGN++PSA ++K+I+G+VG D + + I+LLL EV GKD AE+IASGRE
Sbjct: 1  MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61 KL 62
          KL
Sbjct: 61 KL 62


>AT2G27720.3 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11818696-11819370 FORWARD LENGTH=127
          Length = 127

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 12/74 (16%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGS------------VGVDAEEDLIQLLLTEVKG 48
          MKV+AA+LLAVL G +SP+  D+K+ILGS            VG + E+  I+LLL EVKG
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIVGAETEDSQIELLLKEVKG 60

Query: 49 KDFAEIIASGREKL 62
          KD AE+IA+GREKL
Sbjct: 61 KDLAELIAAGREKL 74


>AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family |
          chr2:11818696-11819370 FORWARD LENGTH=130
          Length = 130

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 15/77 (19%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGS---------------VGVDAEEDLIQLLLTE 45
          MKV+AA+LLAVL G +SP+  D+K+ILGS                G + E+  I+LLL E
Sbjct: 1  MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIGDCFGAETEDSQIELLLKE 60

Query: 46 VKGKDFAEIIASGREKL 62
          VKGKD AE+IA+GREKL
Sbjct: 61 VKGKDLAELIAAGREKL 77


>AT3G28500.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr3:10682204-10682551 FORWARD LENGTH=115
          Length = 115

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKVIAA+LLA LGGN +P++ DLK IL SVG + +E  I LL + +K  D  E+IA+GRE
Sbjct: 1  MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 61 KL 62
          K+
Sbjct: 61 KM 62


>AT5G40040.1 | Symbols:  | 60S acidic ribosomal protein family |
          chr5:16029913-16030257 REVERSE LENGTH=114
          Length = 114

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 1  MKVIAAYLLAVLGGNSSPSALDLKNILGSVGVDAEEDLIQLLLTEVKGKDFAEIIASGRE 60
          MKV+AAYLLA L GN +PS  DLK I+ SVG + +++ I L  + +K +D  E+IA GRE
Sbjct: 1  MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 61 KL 62
          K+
Sbjct: 61 KM 62