Miyakogusa Predicted Gene

Lj3g3v1145880.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1145880.3 Non Chatacterized Hit- tr|F6HHH5|F6HHH5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,41.67,8e-17,no
description,Signal transduction histidine kinase, phosphotransfer
(Hpt) domain; Histidine-contain,CUFF.42290.3
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21510.1 | Symbols: AHP1 | histidine-containing phosphotransm...    55   1e-08

>AT3G21510.1 | Symbols: AHP1 | histidine-containing
           phosphotransmitter 1 | chr3:7578432-7579537 REVERSE
           LENGTH=154
          Length = 154

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%)

Query: 15  DHAVQLIETYLADVDMILSELSLHVDNSQVDLYMLATLAHEIQDKSTSIGAEHMTVACFD 74
           D   Q++  +  D D IL++LSL +D   VD   +    H+++  S+SIGA+ +  AC  
Sbjct: 40  DFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVV 99

Query: 75  VIKACEERRKKRFSQTLTWLKHEFDNTKNKLSSLVQMEKR 114
               CE++  +   + L  +K E+   KN+L +L ++E++
Sbjct: 100 FRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQ 139