Miyakogusa Predicted Gene

Lj3g3v1114700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1114700.1 tr|I3S6P0|I3S6P0_LOTJA Histone H2B OS=Lotus
japonicus PE=2 SV=1,99.3,0,Histone-fold,Histone-fold; seg,NULL;
HISTONE H2B,Histone H2B; no description,Histone-fold; Histone
H,CUFF.42265.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr1...   193   4e-50
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-765...   189   4e-49
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5...   188   8e-49
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein |...   188   1e-48
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | chr...   187   2e-48
AT3G53650.1 | Symbols:  | Histone superfamily protein | chr3:198...   186   5e-48
AT2G28720.1 | Symbols:  | Histone superfamily protein | chr2:123...   184   1e-47
AT2G37470.1 | Symbols:  | Histone superfamily protein | chr2:157...   182   7e-47
AT5G02570.1 | Symbols:  | Histone superfamily protein | chr5:576...   175   7e-45
AT3G09480.1 | Symbols:  | Histone superfamily protein | chr3:291...   167   2e-42
AT1G08170.1 | Symbols:  | Histone superfamily protein | chr1:256...   125   6e-30

>AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein |
           chr1:2413049-2413495 FORWARD LENGTH=148
          Length = 148

 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 95/103 (92%)

Query: 40  AGDXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLA 99
           AGD        NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LA
Sbjct: 46  AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLA 105

Query: 100 RYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           RYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 106 RYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148


>AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 |
           chr5:7652130-7652567 REVERSE LENGTH=145
          Length = 145

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 95/105 (90%)

Query: 38  AAAGDXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSR 97
           A AGD        NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+
Sbjct: 41  AGAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSK 100

Query: 98  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 101 LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145


>AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein |
           chr5:24127206-24127658 FORWARD LENGTH=150
          Length = 150

 Score =  188 bits (478), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/104 (88%), Positives = 95/104 (91%)

Query: 39  AAGDXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRL 98
           A GD        +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+L
Sbjct: 47  AGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKL 106

Query: 99  ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 107 ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150


>AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein |
           chr3:16897492-16897944 REVERSE LENGTH=150
          Length = 150

 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/104 (88%), Positives = 94/104 (90%)

Query: 39  AAGDXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRL 98
           A GD        +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+L
Sbjct: 47  AGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKL 106

Query: 99  ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 107 ARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150


>AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
           chr3:16913614-16914051 REVERSE LENGTH=145
          Length = 145

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 94/105 (89%)

Query: 38  AAAGDXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSR 97
            A GD        +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+
Sbjct: 41  GAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSK 100

Query: 98  LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 101 LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145


>AT3G53650.1 | Symbols:  | Histone superfamily protein |
           chr3:19889358-19889774 FORWARD LENGTH=138
          Length = 138

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 91/92 (98%)

Query: 51  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 110
           N+ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
Sbjct: 47  NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 106

Query: 111 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           EIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct: 107 EIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138


>AT2G28720.1 | Symbols:  | Histone superfamily protein |
           chr2:12327043-12327498 FORWARD LENGTH=151
          Length = 151

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 91/92 (98%)

Query: 51  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 110
           + ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 60  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 119

Query: 111 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 120 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151


>AT2G37470.1 | Symbols:  | Histone superfamily protein |
           chr2:15736832-15737248 FORWARD LENGTH=138
          Length = 138

 Score =  182 bits (462), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/90 (96%), Positives = 89/90 (98%)

Query: 52  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 111
           VETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSRE
Sbjct: 49  VETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 108

Query: 112 IQTAVRLVLPGELAKHAVSEGTKAVTKFTS 141
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 109 IQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138


>AT5G02570.1 | Symbols:  | Histone superfamily protein |
           chr5:576742-577140 REVERSE LENGTH=132
          Length = 132

 Score =  175 bits (444), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/86 (98%), Positives = 85/86 (98%)

Query: 57  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 116
           IYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV
Sbjct: 47  IYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 106

Query: 117 RLVLPGELAKHAVSEGTKAVTKFTSS 142
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 107 RLVLPGELAKHAVSEGTKAVTKFTSS 132


>AT3G09480.1 | Symbols:  | Histone superfamily protein |
           chr3:2914890-2915270 REVERSE LENGTH=126
          Length = 126

 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/86 (94%), Positives = 83/86 (96%)

Query: 57  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 116
           IY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A ESSRLARYNKKPTITSREIQTAV
Sbjct: 41  IYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAV 100

Query: 117 RLVLPGELAKHAVSEGTKAVTKFTSS 142
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 101 RLVLPGELAKHAVSEGTKAVTKFTSS 126


>AT1G08170.1 | Symbols:  | Histone superfamily protein |
           chr1:2562941-2563672 REVERSE LENGTH=243
          Length = 243

 Score =  125 bits (315), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 77/87 (88%)

Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 112
           + Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQE++RL+ Y K+ T++SREI
Sbjct: 149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREI 208

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKF 139
           + AVRLVLPGEL++HAV+EG+KAV+ F
Sbjct: 209 EAAVRLVLPGELSRHAVAEGSKAVSNF 235